Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4618g00011 ATGGCTCTCCAATTCCGCACTGCCTATATTGCCCCATCGTCTCGTGTCTTTGGACGGGGGGAGCTTGTGATAGATTCAACACAGATAGCCACGCGATACTTACGGCGGTATTTCATTGTTGATTTTCTATCTGTGCTGCCCTTACCACAGGTTGTGGTTTGGAGATTTCTTGAAAGATCAAAAGGCTCCGATGTATTAGCAACAAAGCAGGCCTTGCTGTTTATTATCTTACTACAGTATGTTCCTAGGTTTCTTCGGATGTTACCACTGACTTCAGAACTTAAGAGAACAGCTGGTGTCTTTGCTGAAACTGCATGGGAAGGTGCTGCATATTATTTGCTGTTATACATGCTTGCCAGTCATATAGTTGGGGCTTTTTGGTACTTGTTGGCTGTTGAACGCAATGACTCATGCTGGCAGAAGGCATGTACGAATGGGTGCAAAAAGGATTTCTTGTATTGTGGTAACCAGTTTATGGAAGGTTATAATGAGTGGAACAAAACAAGTGATCAAATTCTTAAGGAACATTGCTCTGCCAAAGATGATTCGCCTTTTGATTTTGGAATTTTTAAACAAGCATTGTCATCTGGCATTATTTCATCAAAAAAGTTTGTCTCCAAATACTGTTATTGTTTATGGTGGGGCCTCCAGAATTTGAGTACACTTGGCCAGGGGCTTGAAACCAGCACTTATCCTGGGGAAACCATCTTTTCAATAGCACTAGCCATATTTGGCCTTATCCTCTTTGCACTTCTAATTGGTAACATGCAGACGTATCTTCAATCTATTACCATAAGGCTTGAGGAAATGAGAGTCAAAAGGCGTGATTCAGAACAGTGGATGCATCACCGCTTGCTCCCACCAGAGCTGAGAGAGCGGGTTAGACGCTATGATCAATATAAGTGGTTAGCAACACGTGGTGTGGATGAAGAAAGTTTGGTTCAGACACTTCCAAAGGATCTTAGAAGAGACATCAAGCGTCACCTGTGTCTGGCTTTAGTGAGAAGGGTTCCACTGTTTGAGAGTATGGATGAGAGACTGCTTGATGCCATTTGTGAAAGACTGAAACCTTGTTTATTTACTGAGAATACTTACATTGTACGGGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATTCGTGGTCGACTCGAAAGTGTTACTACAGATGGTGGTAGAAGCGGATTTTTCAACCGTGGTTTCCTTAAAGAGACTGACTTCTGTGGGGAGGAGCTTTTAACCTGGGCACTGGATCCTAGATCTGGTTCTAATCTCCCAACTTCTACTCGAACAGTTAAGGCATTAACAGAGGTTGAATGTTTCGCCTTGATCGCAGATGAGTTAAAATTCGTTGCTAGTCAGTTTAGGCGCCTTCATAGTAGACAGGTTCAACACACATTCCGGTTCTACTCACAGCAATGGAGGACATGGGCTGCCTGCTTTATTCAAGCAGCATGGCGGCGATATTCTAAAAGGAAGGCCATGGAGCTTCGTCGAAAGGAAGAACCTGAGGAGTCAGAAGGAACTCAAAGTAATGTTAGTGGCAGTTCATACAGCATTGGTGCTACCTTCTTAGCTTCAAGGTTTGCAGCCAATGCTCTTCGGGGCATACATCGCAATCGGAATGCTAAGACTGCGAGGGAGTTGGTGAAACTACAAAAACCTCCAGAACCTGACTTTACTGCTGATGATGCAGATTAA 1701 0.4356 MALQFRTAYIAPSSRVFGRGELVIDSTQIATRYLRRYFIVDFLSVLPLPQVVVWRFLERSKGSDVLATKQALLFIILLQYVPRFLRMLPLTSELKRTAGVFAETAWEGAAYYLLLYMLASHIVGAFWYLLAVERNDSCWQKACTNGCKKDFLYCGNQFMEGYNEWNKTSDQILKEHCSAKDDSPFDFGIFKQALSSGIISSKKFVSKYCYCLWWGLQNLSTLGQGLETSTYPGETIFSIALAIFGLILFALLIGNMQTYLQSITIRLEEMRVKRRDSEQWMHHRLLPPELRERVRRYDQYKWLATRGVDEESLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKETDFCGEELLTWALDPRSGSNLPTSTRTVKALTEVECFALIADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKAMELRRKEEPEESEGTQSNVSGSSYSIGATFLASRFAANALRGIHRNRNAKTARELVKLQKPPEPDFTADDAD 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4618g00011 566 PRINTS EAG/ELK/ERG potassium channel family signature 208 225 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4618g00011 566 PRINTS EAG/ELK/ERG potassium channel family signature 1 10 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4618g00011 566 PRINTS EAG/ELK/ERG potassium channel family signature 234 245 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4618g00011 566 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4618g00011 566 PRINTS EAG/ELK/ERG potassium channel family signature 252 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4618g00011 566 PRINTS EAG/ELK/ERG potassium channel family signature 302 309 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4618g00011 566 MobiDBLite consensus disorder prediction 546 566 - -
Pral4618g00011 566 CDD CAP_ED 339 470 IPR000595 -
Pral4618g00011 566 Pfam Ion transport protein 1 265 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral4618g00011 566 SUPERFAMILY Voltage-gated potassium channels 28 261 - -
Pral4618g00011 566 FunFam Cyclic nucleotide-gated ion channel 1 337 455 - -
Pral4618g00011 566 ProSiteProfiles IQ motif profile. 475 504 IPR000048 GO:0005515
Pral4618g00011 566 ProSiteProfiles cAMP/cGMP binding motif profile. 339 423 IPR000595 -
Pral4618g00011 566 Pfam Cyclic nucleotide-binding domain 360 449 IPR000595 -
Pral4618g00011 566 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 560 - -
Pral4618g00011 566 SMART cnmp_10 339 470 IPR000595 -
Pral4618g00011 566 Gene3D Jelly Rolls 337 457 IPR014710 -
Pral4618g00011 566 SUPERFAMILY cAMP-binding domain-like 268 458 IPR018490 -
Pral4618g00011 566 Gene3D - 1 264 - -
Pral4618g00011 566 Gene3D Helix hairpin bin 267 330 - -
Pral4618g00011 566 FunFam Cyclic nucleotide-gated ion channel 1 266 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4618g00011 Pral-Chr4618 121378 134964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4618g00011 1 563 Ion Channels AT5G57940 80.986 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4618g00011 K05391 - gmx:100820202 984.941