Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4617g00002 ATGCCAAAGAAGAGCAAGTGCTTGGTGGTGTTCATTATGATTCTCTCGTTGTTGTTGGCTGTGCAATCCCAAGGAACACCAGAAAGCAGCCTGCTGCAAGATATGCCTCAAAACATCCATCCCACAAGTAAAAGAATTATAATAGCAATCCTTACTGCTATGTTGGGCATATCATTTCTCGTTCTGGCTTACGTAAAGTTCTGTAAAATCCGCTCCTTTACTGAGTCTGATGATCTAAACCTAGATATGAACAATAATCCAGGAATAAGTCGTCGATCTTCATCTGGGTCAAGATATGCCGGGATAGACAAACAAGTGATCCAAGCACTGCCATTTTTCAAGTTCTCTTCACTCAAAGGGTCAAAAGAAGGCTTAGAATGTGCAGTTTGTCTGTCAAAATTCGATGATGTTGAGGTTCTCAGGTTGCTGCCGAAGTGTAAGCATGCTTTCCACATGAATTGCATCGATAGGTGGCTCGAATGTCACTCGACTTGTCCTCTTTGCAGAGACAAGGTTGATCTTAAGGATATCAAGACATTCAATTCCTCCATCAGTTCCAGGTTCCTTCGAGTTCCTTCCGACATAACAGAAGTTCCCGACCTTGAAATCTTTGTTCAGAGGGAGCAATCAAACATGGGTTCTTCTGTATTTAATGATTGGAAACCTGTGCATAGACTTAATCATAAAATAGTTATATCTGATGTAGCTACTAGGAGCAGATGGAGTGATCTTAATTCGTCGGACTTGCTGTCGTTGAATTCTGAGATCCTGAGCACGACATTCTCTGAGGAAGACAACTCGTTTACATTGCTGACTGCTCCGGGGGAGAAGAGATCCATGTCGGAGATTGCCAAGGTGGCGAGGTTTGCAGAAAGCGTCAACGTGGAGGATAATGAGAGGGAAGAGAAAGTGAGGAGGATTTGGTTGCCGATTGTGGAGCGAACTGTGCAGTGGTTTGCGAGTGGAGAGAGCATCTCGACAGAGCCGGAACCCAATGGATTTGCTCCAAATGTTTGA 1017 0.4395 MPKKSKCLVVFIMILSLLLAVQSQGTPESSLLQDMPQNIHPTSKRIIIAILTAMLGISFLVLAYVKFCKIRSFTESDDLNLDMNNNPGISRRSSSGSRYAGIDKQVIQALPFFKFSSLKGSKEGLECAVCLSKFDDVEVLRLLPKCKHAFHMNCIDRWLECHSTCPLCRDKVDLKDIKTFNSSISSRFLRVPSDITEVPDLEIFVQREQSNMGSSVFNDWKPVHRLNHKIVISDVATRSRWSDLNSSDLLSLNSEILSTTFSEEDNSFTLLTAPGEKRSMSEIAKVARFAESVNVEDNEREEKVRRIWLPIVERTVQWFASGESISTEPEPNGFAPNV 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4617g00002 338 CDD RING-H2_EL5-like 126 169 - -
Pral4617g00002 338 Pfam Ring finger domain 126 169 IPR001841 -
Pral4617g00002 338 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Pral4617g00002 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 322 - -
Pral4617g00002 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 177 IPR013083 -
Pral4617g00002 338 SMART ring_2 127 168 IPR001841 -
Pral4617g00002 338 FunFam RING-H2 finger protein ATL43 102 176 - -
Pral4617g00002 338 SUPERFAMILY RING/U-box 106 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4617g00002 Pral-Chr4617 22432 23448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4617g00002 36 323 C3H Transcription Factor Family AT2G20030 37.110 8.74e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4617g00002 K10664 - gmx:100816668 304.679