Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4616g00006 ATGTCAGGAGAAGAAGATGTAGCAGTGCCTGCTGAGGCAGCACCCTTGGGTGAGAGTATGGACATCATGACTGCCTTGCAGCTTGTGTTGAGGAAGTCTCTTGCTCATGGGGGTCTTGCACGAGGGCTTCATGAAGCTGCCAAGGTGATCGAAAAGCATGCTGCACATCTCTGCGTCCTTGCGGAGGACTGTGATCAGCCTGATTATGTTAAGCTGGTCAAGGCACTTTGTGTTGATCATAATGTGAAATTGATGACTGTTGCCAGTTCTAAAACCCTTGGCGAATGGGCTGGTCTGTGCAAGATTGATTCCGAGGGCAAAGCAAGGAAAGTAGTTGGCTGCTCCTGTGTTGTTGTGAAGGATTTTGGAGAGGAGTCACCGGCATTAGATATTGTTCAGCAATACATAAAGGCTCAATAA 420 0.481 MSGEEDVAVPAEAAPLGESMDIMTALQLVLRKSLAHGGLARGLHEAAKVIEKHAAHLCVLAEDCDQPDYVKLVKALCVDHNVKLMTVASSKTLGEWAGLCKIDSEGKARKVVGCSCVVVKDFGEESPALDIVQQYIKAQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4616g00006 139 ProSitePatterns Ribosomal protein S12e signature. 25 43 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pral4616g00006 139 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 25 118 IPR004038 -
Pral4616g00006 139 Gene3D - 4 139 IPR029064 -
Pral4616g00006 139 PRINTS Ribosomal protein S12E family signature 84 105 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pral4616g00006 139 PRINTS Ribosomal protein S12E family signature 109 122 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pral4616g00006 139 PRINTS Ribosomal protein S12E family signature 43 59 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pral4616g00006 139 PRINTS Ribosomal protein S12E family signature 29 42 IPR000530 GO:0003735|GO:0005840|GO:0006412
Pral4616g00006 139 PANTHER 40S RIBOSOMAL PROTEIN S12 11 138 - -
Pral4616g00006 139 FunFam 40S ribosomal protein S12 6 139 - -
Pral4616g00006 139 SUPERFAMILY L30e-like 18 138 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4616g00006 Pral-Chr4616 16127 18372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4616g00006 18 139 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 71.311 4.83e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4616g00006 K02951 - qsu:112009898 228.794