Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4615g00081 ATGGCTGGTATGCTTGCTGGAGTCGAATCAGCTCGAAGGAGACGCTTCCATCAGAGCGGGGCGTCCTCTGATTGCCCTTATTTTACCAGACGATCTTCCTTCTGCTTATATTCAACCAATCACGACTTCCTACCTTCCTCTTCTTATTTGCAGAAAAGAAGCGTATTACACCATGCGCGCACAGATGAAAAGCTCGCAGGAGCAGCCGGGGAAGCCAAAGAAAGATTGGATGAGAGATTACGATCAGCTCAAATGAAATCATCGAACAAAAGGGAAAACATCAAAGAAAAGAAGAAAAGCAGAGAAGGAGGACCAGAGTTACACATAGAGGTCTACGGATCAAAGAGAAGTGGTGGGTCGAGGATGATGTTCAATTGGAAGAAACTGGGCTGGAAGGCTTCAGATCAAGAGGATTGTGCTGTGTGCCTGGAGTCATTCAAGGTTGGAGATACACTGATCCATCTTCCTTGTGCTCACAGGTTTCATTGCAACTGCTTGGAGCCATGGCTACAAAATAATAGTTATTGCCCATGTTGCAGAACTTCCATAATTATATCTCACTAG 564 0.4521 MAGMLAGVESARRRRFHQSGASSDCPYFTRRSSFCLYSTNHDFLPSSSYLQKRSVLHHARTDEKLAGAAGEAKERLDERLRSAQMKSSNKRENIKEKKKSREGGPELHIEVYGSKRSGGSRMMFNWKKLGWKASDQEDCAVCLESFKVGDTLIHLPCAHRFHCNCLEPWLQNNSYCPCCRTSIIISH 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4615g00081 187 Coils Coil 73 93 - -
Pral4615g00081 187 PANTHER SI:CH211-59O9.10 12 183 - -
Pral4615g00081 187 CDD RING-H2_PA-TM-RING 138 180 - -
Pral4615g00081 187 ProSiteProfiles Zinc finger RING-type profile. 139 180 IPR001841 -
Pral4615g00081 187 MobiDBLite consensus disorder prediction 80 102 - -
Pral4615g00081 187 FunFam Zinc finger family protein 111 185 - -
Pral4615g00081 187 MobiDBLite consensus disorder prediction 1 23 - -
Pral4615g00081 187 SUPERFAMILY RING/U-box 128 185 - -
Pral4615g00081 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 185 IPR013083 -
Pral4615g00081 187 Pfam Ring finger domain 138 180 IPR001841 -
Pral4615g00081 187 SMART ring_2 139 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4615g00081 Pral-Chr4615 872333 874292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4615g00081 63 183 C3H Transcription Factor Family AT1G49850 34.752 6.92e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4615g00081 - - tcc:18588906 221.09