Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4615g00078 ATGGGCGTGCAAGACGCGGAGCAAGTTGGTGAAGATATGGAGACCCATGAGAGCAGAAGGAGGACATGGCCTTTGCATTGTGATTTCTTGCGTACCGAGATGGAGAACTGGGAAAAGGAACCTCCTTTGACAACTTCAAGTGTTGGAAATTCATTTCCTCTGGAAAGCATAGGCGAGGATGCAGTGATTGGAGACGAAAGACAGACATTGATGAATTTCATCCCTGTTCGTCGGTCTGGTGAGTGGTCAGATATTGGAGATCGTCCTTATATGGAGGACACCCACATATGTGTTGGAGACATGGCGAAGGAATTTGGGTACAAAGTCATCAGTGAGGGAGCAGTTTCCTTTTATGGAGTATTTGATGGACATGATGGTGAGAGTGCTGCAAAATTTGTCCGTGATTATCTGCCAAGACTGATTGTTGAAGATGCTGACTTTCCCTTGGAGATGGAGAAGGTAGTCACAAGGTCATTCTTGGAGACTGATGCTGCATTTGCAAAGTCTTGTTCTCTTGAGTCTTGCATGCCTTCTGGTACAACTGCACTAACCGCCATTGTACATGGCAGGTCTTTGCTTGTAGCCAATGCCGGAGACTGCAGGGCAGTGTTGTCCCGATGTGGAGGGGCTATAGAAATGTCCAAAGATCATAGACCCTTGTGTACGAAAGAAAGGACGAGGATTGAATCCTTAGGTGGATTTATTGATGATGATGGTTACCTGAATGGCAAACTTGGTGTCACGCGTGCTCTAGGCGACTGGCACCTCAAAGGAATGAAGGAAATGAGTGAAAGAGGACAAGGAGGGCCATTGACCGCTGAGCCAGAACTTAAATTGATGACATTAACTAAAGAAGACGAGTTCTTGATAATTGGGTGTGATGGAATCTGGGATGTATTTACCAGCCAAAATGCCATTGATTTTGCTAGGAGGCGGCTTCGAAAGCACAATGATGTGAAACTATGCTGCAAGGAAATGGTAGGGGAAGCCATGAAGAGAGGATCAACAGACAACTTAACCGTTGTGATGGTCTGTTTCCATGCAGATCCGCCGCCCCCTGTGGTGGTAGAAAGGTCAAGAGTCAGGAGAAGCATTTCAGCTGAGGGACTCCAGCATCTAAGAGCTCTGTTAGAAGGATAG 1140 0.4658 MGVQDAEQVGEDMETHESRRRTWPLHCDFLRTEMENWEKEPPLTTSSVGNSFPLESIGEDAVIGDERQTLMNFIPVRRSGEWSDIGDRPYMEDTHICVGDMAKEFGYKVISEGAVSFYGVFDGHDGESAAKFVRDYLPRLIVEDADFPLEMEKVVTRSFLETDAAFAKSCSLESCMPSGTTALTAIVHGRSLLVANAGDCRAVLSRCGGAIEMSKDHRPLCTKERTRIESLGGFIDDDGYLNGKLGVTRALGDWHLKGMKEMSERGQGGPLTAEPELKLMTLTKEDEFLIIGCDGIWDVFTSQNAIDFARRRLRKHNDVKLCCKEMVGEAMKRGSTDNLTVVMVCFHADPPPPVVVERSRVRRSISAEGLQHLRALLEG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4615g00078 379 SMART PP2C_4 68 344 IPR001932 -
Pral4615g00078 379 SUPERFAMILY PP2C-like 71 347 IPR036457 -
Pral4615g00078 379 Pfam Protein phosphatase 2C 90 338 IPR001932 -
Pral4615g00078 379 PANTHER PROTEIN PHOSPHATASE 2C 68 344 IPR015655 GO:0004722|GO:0006470
Pral4615g00078 379 FunFam Probable protein phosphatase 2C 22 63 349 - -
Pral4615g00078 379 CDD PP2Cc 77 346 IPR001932 -
Pral4615g00078 379 Gene3D - 76 349 IPR036457 -
Pral4615g00078 379 ProSiteProfiles PPM-type phosphatase domain profile. 78 346 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4615g00078 Pral-Chr4615 851353 854888 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4615g00078 73 379 PP2C-type Phosphatase Gene Family AT2G25620 58.958 3.50e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Pral4615g00078 PP2C 8.3e-66 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4615g00078 K14803 - gmx:100782648 550.821