Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4615g00060 ATGGGGAAGAAAAAGGAGCAAGTGGGGGATAAATCCAGTGATGATGGTGGCGGGAATCAAAGCAAAGTTGGAGATAGTAGCCCCAAAGCGTATGATAAGGATACCATGGCATTCATATCCATGGCTCAGGAATTAAAGGATGAGGGGAACAAGCTATTCCAAAAGAGGGACCATGAAGGAGCCATGATAAAATATGAGAAAGCTCTCAAGTTGCTTCCAAAAAATCATATAGATGTTTCATATCTACGGAGTAACATGGCGGCATGCTACATGCAGATGGGACTTGGTGAGTACCCCAGGGCGATTCATGAATGTGATTTAGCCCTTGAGGTTACACCAAAATACAGTAAGGCACTGTTGAAGAGGGCTAGGTGTTATGAAGGTTTAAATAGACTGGATTTAGCTCTGAGAGATGTTAGTAGCATTTTGAAGATGGAACCCAATAATATCATGGCATTGGAGATTTCTGAAAGGGTCAAAAAAACCCTTGAGGAGAAAGGATTAAGAGTGAATGATACAGTGATTGAGTTGCCTCCTGATTATGTTGAACCTTCTTATGCTTTGCCTCCAGAAAAAGCGGTGAAAGAGAAGACACGCAAGAAGAAGAGCAACAAAGTTGAGATGAAGACCATTGATAATAAAACTGTGGAAAAACAAGATGGGGAGAAATTGGAAGAGAAGGTCGAGGACAATGTTGAGAAGGCTGGGAAGAAATCTAAAAGAAAGGCCAAGGAGAAAATTGATGAGAAGAAAGCCGATGTTAAAGAGGTTGTAGAGGAAACAATTAATGGTAGAAGAGATGGTATGCCTAAGAAAACAGCAAAACTTGTTTTTGGTGAGGACATAAGATGGGCGGAATTGCCAATTAATTGCAGCCTTTTGCAGTTAAGAGAAGTTATCTGTGACCGCTTCCCAAGCCTAGGAGCAGTTCTTGTTAAGTACAGAGACCAAGAAGGTGATTTGGTCACAATCACTTCTGACTCTGAGTTAAGATGGGCAGAAACTTCAGCAGGATCACAAGGTTCAATCCGGCTGTACATTGTTGAAGCTACTCCTGAGCAGGATCCATTCTTTGAGAAACTTCACAAAATGGAGGTGCAAAAGCCTCCTGTCAGTAGAGCTCCTGAGAATGGCTGCGTGTTGAAAGAAAAGGAAGTGATAAACTCATCTTGCATTGAGGATTGGACAATACAGTTTGCCCAGCTGTTCAGAAACCACGTTGGATTTGAATCTGATAGATATTTGAATTTTCATGAGCTTGGGATGAAGCTCTATTCTGAGGCTATGGAGGACACAGTTACAAGTGAAGAAGCACAAGGCTTATTTGACATGGCGGGAGATAAGTTCCAAGAGATGACAGCTCTAGCGTTGTTCAACTGGGGAAATGTTCACATGTCTAGGGCAAGGAAGAAAGTTTATTTCCCTGAAGATTCTTCTAAGAAGCATCTATATGAACAAATCAATAGTGCATATGACTGGGCAGAGAAAGAATATAAAAATGCAGGAGAAAAATATGAAGCAGCCGTTCAAATGAAATCAGATTTTTTTGAAGGCTTTCTGGCGCTGGGGCAGCAACAATTTGAGCAAGCAAAACTTTCTTGGTATTATAATGCAATCAGCGGCAGTGCTGATTCAGCATCGTGGCCCTCTGCTCATGTTCTTCAGCTTTATAACAATGCTGAAGATAATATGGAAAAAGGAATGCAGTTATGGGAACAGTCAGAGGAGCATCGCTTGATCGAAGCCTCCAAATCCAAGGATGTCAAATTACTCTTAGATGACATGGGATTGGATGGTATGCTTAAAAATATATCAGCTGATGAAATTGCTGCGCAGGCTGCAAATATGAGATCTCAGATAAATCTGCTGTGGGGTACCATGCTATATGAGCGTTCAATTGTGGAATTCAAAGTTGGGTTACCAGTATGGCATGAATCTTTGGAAGTAGCTGTTGAGAAGTTTAAACTTGCTGGAGCTTCTCCTACAGATATATCTGTGATGCTGAAGAACCACTGTTCAAATAATACTGCTGCTGATGGTCTAGAGTTCAAAATTGATGAAATAGTACAAGCATGGAATGAGATGTATGAAGCTAAAAAGTGGCAGCGTGGAGTTCCTTCATTTCGCTTAGAAACCTTATTTAGGAGGCGAGTTTCAAAAATTTATCATGCCTTGGAGCTTGTGTGA 2187 0.4115 MGKKKEQVGDKSSDDGGGNQSKVGDSSPKAYDKDTMAFISMAQELKDEGNKLFQKRDHEGAMIKYEKALKLLPKNHIDVSYLRSNMAACYMQMGLGEYPRAIHECDLALEVTPKYSKALLKRARCYEGLNRLDLALRDVSSILKMEPNNIMALEISERVKKTLEEKGLRVNDTVIELPPDYVEPSYALPPEKAVKEKTRKKKSNKVEMKTIDNKTVEKQDGEKLEEKVEDNVEKAGKKSKRKAKEKIDEKKADVKEVVEETINGRRDGMPKKTAKLVFGEDIRWAELPINCSLLQLREVICDRFPSLGAVLVKYRDQEGDLVTITSDSELRWAETSAGSQGSIRLYIVEATPEQDPFFEKLHKMEVQKPPVSRAPENGCVLKEKEVINSSCIEDWTIQFAQLFRNHVGFESDRYLNFHELGMKLYSEAMEDTVTSEEAQGLFDMAGDKFQEMTALALFNWGNVHMSRARKKVYFPEDSSKKHLYEQINSAYDWAEKEYKNAGEKYEAAVQMKSDFFEGFLALGQQQFEQAKLSWYYNAISGSADSASWPSAHVLQLYNNAEDNMEKGMQLWEQSEEHRLIEASKSKDVKLLLDDMGLDGMLKNISADEIAAQAANMRSQINLLWGTMLYERSIVEFKVGLPVWHESLEVAVEKFKLAGASPTDISVMLKNHCSNNTAADGLEFKIDEIVQAWNEMYEAKKWQRGVPSFRLETLFRRRVSKIYHALELV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4615g00060 728 SMART PB1_new 271 350 IPR000270 GO:0005515
Pral4615g00060 728 MobiDBLite consensus disorder prediction 216 246 - -
Pral4615g00060 728 Gene3D - 272 350 - -
Pral4615g00060 728 Pfam PB1 domain 273 349 IPR000270 GO:0005515
Pral4615g00060 728 ProSiteProfiles PB1 domain profile. 271 350 IPR000270 GO:0005515
Pral4615g00060 728 ProSiteProfiles TPR repeat profile. 116 149 IPR019734 GO:0005515
Pral4615g00060 728 SUPERFAMILY TPR-like 39 158 IPR011990 GO:0005515
Pral4615g00060 728 SUPERFAMILY CAD & PB1 domains 273 359 - -
Pral4615g00060 728 CDD PB1 279 347 - -
Pral4615g00060 728 SMART tpr_5 116 149 IPR019734 GO:0005515
Pral4615g00060 728 SMART tpr_5 42 75 IPR019734 GO:0005515
Pral4615g00060 728 SMART tpr_5 80 115 IPR019734 GO:0005515
Pral4615g00060 728 Gene3D Tetratricopeptide repeat domain 39 170 IPR011990 GO:0005515
Pral4615g00060 728 Coils Coil 240 260 - -
Pral4615g00060 728 PANTHER PROTEIN CLMP1 3 726 IPR044517 -
Pral4615g00060 728 MobiDBLite consensus disorder prediction 1 30 - -
Pral4615g00060 728 ProSiteProfiles TPR repeat profile. 42 75 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4615g00060 Pral-Chr4615 658051 661384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4615g00060 25 149 Calmodulin-binding Proteins AT3G25230 32.374 6.22e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4615g00060 K26538 - gmx:100807387 1058.51