Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4615g00056 ATGGTTGAGCAATTCTCAGTTGACTTGTCATGGACATTTGTTGCAGGCATTTTCTGGACTCGTAGTTCTCTTGTTATTGATTCCGTCCTGGTTGGTCCAGTGTTGTTTCAAGCATTTCGGATGATTCCTTACTTGACTGAGATCTCATACTTTGATATGGAAGGTCTCTTCTTCTCATACTATATTGACCATGATCGAACTCTAGCATTGTACTCTAACTCTTCGTTTTCTTCTCCCTTGGATGCTTCAAAACTGATGTACTATGTTCAACCTGTAAACCCTAGCACCGGAGGATTATATGGTGAATCCAAAATATATGAGCGTCCAATTAATGCAAGTAAGATTCAGGAAGTAGTAAATAGTTCCCATGGATATTCCTCATTAGGATCCATGTGGAGCAATGATCATCAAATTTTATATGTTAATTCAGTAAGAATATCAAGAACAGAAGTGATCTCATTAGGGTTTGCTGCGACTTCTATTATTAATTTCGTCACTCCTATTAGGCATCAAGGTGAAAGCTTGTTATATTTGGCTTCTAAGGATGGGAAAGTGATTCTCCAAGGATTCCAAACAATCCATATAGATATAGAATTCTCTAATGATACAGCTTCCTTCCATTCAATCAAATCAAATGGCAACCAAAAGAGTTATCAGGGCTATGTTTCATGCAAGGATGAAGCTTCTGCTTCAGTTTTAAAAGTTGGGGCTACTCAGTATTTGACATGCTGCTCATCAATTGATGTAATGGGAGTAGATTCGGTATACGTCATAGCAATACCACAAAATGGTGGATTGGTGGCCTTTGCACATAAGAGTAGAAAACTGGGGTTAGTGCTAATGAGTTGTATGATAGTTACTGTATTGATCTCCGTCTTCAGTTTTCTATTACTAAATACTATAGTCGGTTGGAGAGAGATGCATTTGTGTGCCTCTCTAATCAAACAAATGGAAGCCACTCAACAAGCTGAGAGGAAGAGTATGAACAAGAGTCTCGCATTTTCCAGTGCAAGCCATGATATTCGTGCTTCTCTTGCTGGACTTACTGGTTTGGTTGAGATTTCTCGTGAAGAAGTGATTGCTGGTTCAGAACTAGAGACCAATTTAAAGCAAATGGGTGCTTGTATAAAAGACTTACAAGGGCTGTTGAATTCTATTCTTGATACAAGTAAAATTGAAGCAGGGAAAATGCAACTTGAGGAACAGGAATTTGATCTCTCCCAGTTTGTAGAAGATAAAGTTGACTTATTTCATCCTTTGGCTATGAAGAAAGGTGTAGATCTTGTATTAGACCACTGTGATGGTTCTATGATAAGATATTCACATGTTAAAGGTGACAAAGGAAAGCTTCAACAAGTTTTGTGTAATTTATTGAGTAATGCTGTTAAATTTACTGATAAAGGACACATAGTAGTTCGAGCTTGGGCTCAAAAGCCAACTTTTCAGAACTCAATAATTTCTACTCACAGATACAGTTTCATGAAACTCTTTTCACGCTTATGCTGCGAGAAAAATGAAGCGGATATTGATGTAGAAGCCTTGACTAATACAACCCAGCAAGACCCAAACTACTTGGAGTTTGTGTTTGAAGTTGATGACACTGGAAAAGGAATTCCTAAAGAGAAGCAAGCGTCAGTGTTTGAGAATTATGTTCAAGTCAAAGAAACTGCTTTGGGACTAGAAGGGACTGGCTTGGGACTTGGTATTGTGCAATCACTGGTACATTTGATGCATGGGGATATTGAAATTGTGGACAAGGAAATTGGTGAAAAAGGAACATGCTTTAGATTTAGTGTCCTCCTTGCCGTGAGTGAGACAGTCACTGGTAGCAATAATAGCACTAGGGAGGTTAATAATTTAGATCAACATCAAGGACAACATATAAACAAACCTAGTTCTGGTTCTAGCACATGTTCCCCAAGTCCAAGATTACCTATTTTTGCCTCTAATAGGTTAGGGGATTCTCGTGTTATTCTTCTGATTCAAAATGAGGGGCGTCGAAGGATTACCAAAAGGTTCATGGAGAGATTAGGGATTAAAGTTAAGGTTGTGAAGCATTGGGAACATTTATCACATGCTCTCCAGAAGATCAAGCAAAAAGGGTGCAATTCCAGCCAAAGCTCTACAGGAGCATCATATATGAATTCTCAGTCTACACGCCACAATTCTAATAATGCTAGAGCCAAAGGATTTCCTTTGAGTGTTACAGATGGATCAGCAGACTATATCTCTTCATTTTTTAACAAGTTAGAAGATGGGGTTTCCTTGGGTTTAGTTCTGCTTGTGATTGATGCATTAGCAGCACCCTTTGCAGAACTTGGCATAATGATATCTGAGTTTAGAAGAGGCCTCAGAATTCCTTGTAAGGTTGTTTGGTTAAACAAGCCACTTTTGCGGAATGTAGATTTCAAAGCACTAGATGAAGATGTGATTGATCCAAATGACATTGTTCTATCTAAGCCATTTCATGGTACTCGTTTGTTCAACATTATCAGTCTTCTACCTGAGTTTGGCGGGGATTATACATGCATATCTGAGATAGGAAGAACAAGTAGAGACATTTTTCACATTACAATGAGGAAGACATCAAAAAAATCTAATATATCAAGATATCAATCACCTCCATTAGACAGAATAGAAGTTCCCTCACTTCATGCATCCCCACTTCAAGATGTTGAACTACAAGATTGTGATTGTTCATGGAAGATGGAACAACTGCATTCTTATGGAGAGATACAAGAATGTAGTACTTCAACTAGTGACAAGCCCTTGAGTGGCAAAAGATTTTTGGTTGTTGATGACTGCGAGTGCCAACGTATGATAACTTTGAAGACTTTGAAACAACTAGGTGCGACAAGTATGGAATGTAATAATGGCGAAGATGCAGTGAACTTAGTTAAAGAGGGTCTAACCGTGGCTTTCCCCTATTTTCCTTATGATTATATCATAATGGACTGTGAGATGCAAGTGATGGACGGATTTGAGGCAACAATGCAGATAAGAGAGATAGAGAAGAGTTATGGGGTCTACATTCCTATCATGGCATTAACAGCTCATGCGTATGTGGACAAAGCAAATAAGATCAAAGAGGCAGGAATGGATGCTCATTTAAGCAAGCCACTGAGTAAAGAGCATTTATTAGATGCCATCAAATATATAGATGGTAAATTGTGTAACATGTCAATGATGTAG 3192 0.3838 MVEQFSVDLSWTFVAGIFWTRSSLVIDSVLVGPVLFQAFRMIPYLTEISYFDMEGLFFSYYIDHDRTLALYSNSSFSSPLDASKLMYYVQPVNPSTGGLYGESKIYERPINASKIQEVVNSSHGYSSLGSMWSNDHQILYVNSVRISRTEVISLGFAATSIINFVTPIRHQGESLLYLASKDGKVILQGFQTIHIDIEFSNDTASFHSIKSNGNQKSYQGYVSCKDEASASVLKVGATQYLTCCSSIDVMGVDSVYVIAIPQNGGLVAFAHKSRKLGLVLMSCMIVTVLISVFSFLLLNTIVGWREMHLCASLIKQMEATQQAERKSMNKSLAFSSASHDIRASLAGLTGLVEISREEVIAGSELETNLKQMGACIKDLQGLLNSILDTSKIEAGKMQLEEQEFDLSQFVEDKVDLFHPLAMKKGVDLVLDHCDGSMIRYSHVKGDKGKLQQVLCNLLSNAVKFTDKGHIVVRAWAQKPTFQNSIISTHRYSFMKLFSRLCCEKNEADIDVEALTNTTQQDPNYLEFVFEVDDTGKGIPKEKQASVFENYVQVKETALGLEGTGLGLGIVQSLVHLMHGDIEIVDKEIGEKGTCFRFSVLLAVSETVTGSNNSTREVNNLDQHQGQHINKPSSGSSTCSPSPRLPIFASNRLGDSRVILLIQNEGRRRITKRFMERLGIKVKVVKHWEHLSHALQKIKQKGCNSSQSSTGASYMNSQSTRHNSNNARAKGFPLSVTDGSADYISSFFNKLEDGVSLGLVLLVIDALAAPFAELGIMISEFRRGLRIPCKVVWLNKPLLRNVDFKALDEDVIDPNDIVLSKPFHGTRLFNIISLLPEFGGDYTCISEIGRTSRDIFHITMRKTSKKSNISRYQSPPLDRIEVPSLHASPLQDVELQDCDCSWKMEQLHSYGEIQECSTSTSDKPLSGKRFLVVDDCECQRMITLKTLKQLGATSMECNNGEDAVNLVKEGLTVAFPYFPYDYIIMDCEMQVMDGFEATMQIREIEKSYGVYIPIMALTAHAYVDKANKIKEAGMDAHLSKPLSKEHLLDAIKYIDGKLCNMSMM 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4615g00056 1063 Gene3D - 906 1054 - -
Pral4615g00056 1063 PANTHER TWO-COMPONENT HISTIDINE KINASE 56 1051 - -
Pral4615g00056 1063 PRINTS Bacterial sensor protein C-terminal signature 561 579 IPR004358 GO:0016310|GO:0016772
Pral4615g00056 1063 PRINTS Bacterial sensor protein C-terminal signature 527 541 IPR004358 GO:0016310|GO:0016772
Pral4615g00056 1063 PRINTS Bacterial sensor protein C-terminal signature 545 555 IPR004358 GO:0016310|GO:0016772
Pral4615g00056 1063 SMART HisKA_10 329 395 IPR003661 GO:0000155|GO:0007165
Pral4615g00056 1063 SUPERFAMILY CheY-like 923 1052 IPR011006 -
Pral4615g00056 1063 Gene3D - 397 608 IPR036890 -
Pral4615g00056 1063 CDD REC_hyHK_CKI1_RcsC-like 929 1050 - -
Pral4615g00056 1063 Gene3D - 316 396 - -
Pral4615g00056 1063 MobiDBLite consensus disorder prediction 701 726 - -
Pral4615g00056 1063 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 317 397 IPR036097 GO:0000155|GO:0007165
Pral4615g00056 1063 ProSiteProfiles Response regulatory domain profile. 928 1054 IPR001789 GO:0000160
Pral4615g00056 1063 ProSiteProfiles Histidine kinase domain profile. 336 603 IPR005467 -
Pral4615g00056 1063 Pfam Response regulator receiver domain 930 1051 IPR001789 GO:0000160
Pral4615g00056 1063 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 384 599 IPR036890 -
Pral4615g00056 1063 SMART REC_2 927 1050 IPR001789 GO:0000160
Pral4615g00056 1063 SMART HKATPase_4 445 603 IPR003594 -
Pral4615g00056 1063 CDD HisKA 330 391 IPR003661 GO:0000155|GO:0007165
Pral4615g00056 1063 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 445 601 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4615g00056 Pral-Chr4615 613495 621419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4615g00056 31 1056 Histidine Kinase Gene Family AT2G47430 38.491 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4615g00056 HATPase_c 1.8e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4615g00056 - - pcin:129308889 1488.4