LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4614g00002	ATGGCACATCCAGCACTATCCTCTTCTATCACTTACAACTGGACTTATGATGTGTTCCTTAGTTTTTATGGTGAAGATACTCGCTTAGGCTTCACCAGCTATCTCTACAATTCTCTGCATCAAAGAGGAATTCACGCCTTTCTCGATGATGAATTCATTAGGATTGGGGAAAATATCACACCTGCGCTTTTTCAAGCTATACAAGAATCAAGAATAGCCATCATAGTTTTCTCAGAAAACTATGCAAACTCAACATTTTGTTTGCAAGAACTGGAAAAGATTCTGGAGTGCTTCAAGGAAGAGAGTCGGTTGATATATCCAGTATTTTATTATGTGGACCCATCAGAACTACGACGTCCCAGAGAAAGCTATGCAGAAGCATTGGCTCGACTGGAGAAAAGATTCGAAGACAACAAGCACAAGGTGGAAAAATGGAGGCTCGCTCTGTCTCAAGCTGCTGAACTCAAAGGCTGTCATCTCAAACCCAAGATTGCAAATGAACAAGAGTGTATTACAAGGATCACGAAAGAAATTGCTGCTAAGATTAACCAGCAGCATTTACATACTACAGATTATCAAGTTGGACTTGTGCCCCGAGCCAAGGAAGTTATCACTTATTTAGATCTTTGGTCTACTGAAGAAAAAAAAATTATAGGAATTTGGGGAGCTGGCGGAATAGGTAAATCCACTATTGCAAGAGCTGTATATAATTCCATTGCTGATAATTTTGAAGGCTTATGTTTTCTTTCTGATGTAAGAAAACATTCTGAAAATCCAACTGGTTTGTCACATCTTCAAGAGACATTATTACGTACATTAGTCAAGGAGAAAGATCTCAGATTGGGTGACTATCATGAAGGAATACCAATAATAGAACATAGGCTTAGTAAGAGGAAGATTCTTTTGATTCTTGATGATGTTGACAAGTTAGAGCAATTAAAAGCACTTGCTGGTAGTTCTAACTGGTTTGGTTGTGGAAGTAGAATCATCATCACAACCAGGAATAAGAAATTATTAGTGAGTCATGGTGTTACAAGCATTTATGACGTCAAGGAATTAGATGATAAGGAATCTCTTAAGTTGCTTAGTTGGCATGCCTTTGAAAAAGAAAACGTGGATTCGAACTTCATAGAGGCTTGCAATCGTGCCATAAATTATTCATGTGGTTTTCCACTAGTTTTAGAAGTGATTGGTTCTAACTTGCGTGGTGAAGGAGTTAATCTTTGGAATTCTGCATTGGATCAATTCAAAAGCATTCCACATGAAAGTATTTTGGGCGCCTTCAAATTAAGCTATGATACTTTAGGGAAAGTGGAGAAACAAGTTTTCCTTGACTTGGCTTGTTTTTTCAATGGTGAGAAATTAGCAATTGTCAGTGATATGTTGCTATGTGTTCGTGGAATCCGATTAGAATATGCCATTAAAGTGTTGACTGATAAATCCCTAATAAAGATTGAAAGAGCTTGTGTGATAATGCACGACTTGATAGAAGATATAGGTAAAGAGATCGTTCGACAACAATCACCATGTGAGCCTGGTGGACGTAGTAGACTATGGTTCTACAAAGACATTCTTCATGTCTTGCAACAAGACACGGCACTAAACTTTCAATCTGGGAAAAAAAACTTTATTTTACCTGGAGAAAAATTTCCAGAAGGGCTCCATAACTATAGTCGGGAAAATTCTGTGTCATTCTGGGTTCGCAACATGTTCCCAACGACTTTTCTCTGGATTCTTGTTAAAGATAACCAGGATTATGTCTACAGTTGTCAATTCTCTGTGGACATTGACGAGGCCATCAGGCTGGGTATTTCTTCTAAGTGGAGTTCATTGTCACCAATAAAGACTAATCATATTTATATATGTGATATGCACAGCATGATTCACAACACTGAACTCCCCATTACAAATGAGTGGAGTCAAGTGAAGGCTGCCATTAAGAGCAAAACACAGGAAACAGAAGGCGAAAAAGAAATTTATTTTGGAGTTCATGTATACGATCTACAAAGCAACTTGGAAAATATTCAATTCGTGGAACCCGTGGATTACTCAACAAAAGACATATGTGTCAAGCACAAGTTTAAGTGTTATCAGGATTTACAAATTTCGGTAGATGGCGGTTATATTTGGTCAGGAGGTCGTTCCTACGACAACTTGATTGAGTTGTGCCTGGCAGATTGCAACAGATGTCGGAGAATTCCTGCACTTCACCATCTACCTTCTCTGAGGTCCTTAAGAATTGAAAGATTACAACGTGTGGTGACTGTGGATTCTGAGTTTTTCAAGGCTGCAAATGATTGTGCTTCACTTATAGTACCGTTTCCCTCCCTTGAAACCCTTCATTTTGAAGATATGATCTCCTGGCAACAATGGCATTCTATTGATATGCAAGCTTTTCCTAAACTCCGCTTTCTTAGCTTTGTTGATTGCCCCGAATTAGTTGGAAATTTACCTCCCCAACTTCTTTCTTTAGAGGGTCTGAGAATTATGTCATGTCCACTGCTTGCTTCTTCTATCCCAAAGTGTCCAAACATTCACGAATTAGCAATAATTAAAAGTGAAAATGTAGTGTTGCAAGAGCAAGAATTACCACCTTCCCTACGCCGTCTGGCAATTTCAAGCGCGCACATGTTGGGTCCTCTGTCTGAAAAGTCGCATATTGAAGATTTAACGGTGGATTGTTCTGATGCTGTGCCATCTCCAGTGATTCATATTCCCCCTTCAGCGAAACAGTTAGACGTGAGAAACTGTGAAAATCTCAAGGCTTGTTTGGTTTCAAAGGCACCTCTTCTTCATCTCCGAAAGATTTCCATTTACAAATGCAAGTTTCTGCCGTCCTTGTTTGATGGCATGGAACGTCTTGTCCCAAATTTAAAAGAGCTAAGCATAGAAGGATGTCCAGAAATGGAGCCATTTTCAGCAAGTGGCATCGCCTTCCAACTATCACTGAGCTTCTCATCTCTACTCTATCTGACACATTACATTGCACGGGACTTCAACATCTAA	3006	0.3922	MAHPALSSSITYNWTYDVFLSFYGEDTRLGFTSYLYNSLHQRGIHAFLDDEFIRIGENITPALFQAIQESRIAIIVFSENYANSTFCLQELEKILECFKEESRLIYPVFYYVDPSELRRPRESYAEALARLEKRFEDNKHKVEKWRLALSQAAELKGCHLKPKIANEQECITRITKEIAAKINQQHLHTTDYQVGLVPRAKEVITYLDLWSTEEKKIIGIWGAGGIGKSTIARAVYNSIADNFEGLCFLSDVRKHSENPTGLSHLQETLLRTLVKEKDLRLGDYHEGIPIIEHRLSKRKILLILDDVDKLEQLKALAGSSNWFGCGSRIIITTRNKKLLVSHGVTSIYDVKELDDKESLKLLSWHAFEKENVDSNFIEACNRAINYSCGFPLVLEVIGSNLRGEGVNLWNSALDQFKSIPHESILGAFKLSYDTLGKVEKQVFLDLACFFNGEKLAIVSDMLLCVRGIRLEYAIKVLTDKSLIKIERACVIMHDLIEDIGKEIVRQQSPCEPGGRSRLWFYKDILHVLQQDTALNFQSGKKNFILPGEKFPEGLHNYSRENSVSFWVRNMFPTTFLWILVKDNQDYVYSCQFSVDIDEAIRLGISSKWSSLSPIKTNHIYICDMHSMIHNTELPITNEWSQVKAAIKSKTQETEGEKEIYFGVHVYDLQSNLENIQFVEPVDYSTKDICVKHKFKCYQDLQISVDGGYIWSGGRSYDNLIELCLADCNRCRRIPALHHLPSLRSLRIERLQRVVTVDSEFFKAANDCASLIVPFPSLETLHFEDMISWQQWHSIDMQAFPKLRFLSFVDCPELVGNLPPQLLSLEGLRIMSCPLLASSIPKCPNIHELAIIKSENVVLQEQELPPSLRRLAISSAHMLGPLSEKSHIEDLTVDCSDAVPSPVIHIPPSAKQLDVRNCENLKACLVSKAPLLHLRKISIYKCKFLPSLFDGMERLVPNLKELSIEGCPEMEPFSASGIAFQLSLSFSSLLYLTHYIARDFNI	1001

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4614g00002	1001	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	184	-	-
	Pral4614g00002	1001	Gene3D	-	352	436	IPR042197	-
	Pral4614g00002	1001	Gene3D	-	179	345	IPR027417	-
	Pral4614g00002	1001	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	157	IPR035897	-
	Pral4614g00002	1001	ProSiteProfiles	TIR domain profile.	14	182	IPR000157	GO:0007165
	Pral4614g00002	1001	Pfam	NB-ARC domain	212	422	IPR002182	GO:0043531
	Pral4614g00002	1001	Gene3D	Ribonuclease Inhibitor	666	995	IPR032675	-
	Pral4614g00002	1001	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	972	IPR044974	GO:0006952
	Pral4614g00002	1001	SMART	till_3	15	155	IPR000157	GO:0007165
	Pral4614g00002	1001	SUPERFAMILY	L domain-like	716	972	-	-
	Pral4614g00002	1001	Gene3D	-	12	178	IPR035897	-
	Pral4614g00002	1001	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	446	IPR027417	-
	Pral4614g00002	1001	SUPERFAMILY	"Winged helix" DNA-binding domain	424	529	IPR036390	-
	Pral4614g00002	1001	Pfam	TIR domain	16	186	IPR000157	GO:0007165
	Pral4614g00002	1001	PRINTS	Disease resistance protein signature	387	401	-	-
	Pral4614g00002	1001	PRINTS	Disease resistance protein signature	294	308	-	-
	Pral4614g00002	1001	PRINTS	Disease resistance protein signature	953	969	-	-
	Pral4614g00002	1001	PRINTS	Disease resistance protein signature	217	232	-	-
	Pral4614g00002	1001	Coils	Coil	121	148	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4614g00002	Pral-Chr4614	74885	81381	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4614g00002	3	539	WRKY Transcription Factor Family	AT4G12020	30.530	9.61e-50	190

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4614g00002	-		-	pcin:129311761	790.03