Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4611g00002 ATGGTTTCAGCGCTGACGCATGTGGTATCTGGATCTGGTGGTCAGGGACGCACCGAATGGATACCTGTGACGTCACCTCTTGTCCAGCCTTCGCTTCCTTCTTCTTCTGTTTTGTCGCCTTACTTGTCTTCTTCTTCTTCTTCATCTTCTTCTGCTTCAGGCTCTGTTTTGAGCTCTGCTTCTGGTTCTACCGCTTCCGCTGGCCAAAAACGAGCACGTGACCAGCAGAGCTGTGTCTATGGAGCTTTCACTGACTTCAGAGTCCCCTCGCAGGGACAATCATCTTCTGTGACAGAGGAGGGGACGAATGTTGCACCCGGTGTGATAGTGGAGACGGCGGCAGCGACGGCTGAGGAAAGCGGTGAGAGGAGGAGAAGGTACAGAGGAGTGAGACAAAGACCGTGGGGGAAATGGGCAGCCGAAATTCGTGATCCGCACAAGGCGGCGAGAGTCTGGCTTGGTACATTCGACACGGCGGAGGCTGCCGCCAGAGCTTACGATGAAGCTGCATTGAGATTCCGAGGAAACAGAGCAAAGCTGAATTTCCCGGAAAATGTCAGAGTAGTACCCCCTGCTCACAACTTTCCTGCCACTCGCCCCGCGGCATCGGATTCTCGGGCGATTCATTTCCAGCAACAGACTCCTAATCTTCCTCCTCCACCTCCTCCACCGCAGCCGCAGTTCTTACAGTCACCGTCTTTTCAGACGCCACCGGATTTAATCAGAGATTATTGGGAATATTCTCAGCTGCTTCAGAGCTCCGACGAGTTCCAACAACAACAACAACGTCAGCAATCCCAACAACAACATTCGAATTTGTTACAACAATGGTTATACAATTCACAATTGGCGGCGCTTCAATCGTCTTCTTTGTTATTATCATCGTCACCCCTGTCTTCTTCTTCGTCCCCAACAGCATTCTCACCTTCAAGCCAGCTATCCTCTGCTTCATTTCCCCTGTTTTCCAGTCAGCATTCAGGTTACTTCCGGCCACCAGGAAACGCACAGAGCGGCAGTGGCGGCGACATCGGCGGTGGGTCACACTTTCCGGCGTCAACTTGGTCAGATACTAGTGGCTACCCTCCTCCATCCGGTCCAGGCTGA 1104 0.5272 MVSALTHVVSGSGGQGRTEWIPVTSPLVQPSLPSSSVLSPYLSSSSSSSSSASGSVLSSASGSTASAGQKRARDQQSCVYGAFTDFRVPSQGQSSSVTEEGTNVAPGVIVETAAATAEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRVVPPAHNFPATRPAASDSRAIHFQQQTPNLPPPPPPPQPQFLQSPSFQTPPDLIRDYWEYSQLLQSSDEFQQQQQRQQSQQQHSNLLQQWLYNSQLAALQSSSLLLSSSPLSSSSSPTAFSPSSQLSSASFPLFSSQHSGYFRPPGNAQSGSGGDIGGGSHFPASTWSDTSGYPPPSGPG 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4611g00002 367 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Pral4611g00002 367 MobiDBLite consensus disorder prediction 1 20 - -
Pral4611g00002 367 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Pral4611g00002 367 MobiDBLite consensus disorder prediction 211 233 - -
Pral4611g00002 367 MobiDBLite consensus disorder prediction 294 367 - -
Pral4611g00002 367 CDD AP2 134 185 IPR001471 GO:0003700|GO:0006355
Pral4611g00002 367 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Pral4611g00002 367 MobiDBLite consensus disorder prediction 294 333 - -
Pral4611g00002 367 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Pral4611g00002 367 MobiDBLite consensus disorder prediction 214 231 - -
Pral4611g00002 367 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Pral4611g00002 367 PANTHER DNA-BINDING DOMAIN 61 273 IPR044808 GO:0003700|GO:0009873
Pral4611g00002 367 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Pral4611g00002 367 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Pral4611g00002 367 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Pral4611g00002 367 MobiDBLite consensus disorder prediction 29 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4611g00002 Pral-Chr4611 34821 36803 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4611g00002 118 190 AP2-EREBP Transcription Factor Family AT2G33710 78.082 6.74e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4611g00002 AP2 6.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4611g00002 - - pcin:129292679 224.557