Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral4606g00046 | ATGGCTTCTAGCAATCCATTCTTTGATGATATACAAAGCAAATCTGATGTTGATCCTCCTTCAAATGAAGAGCCAATGGATATCATTGAGCTTGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGTTTGAATGCAATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGTTCAGGTTGCAAACCCAGGGTCCACAACCGGTGTCCTACCTGTAGACATGAGCTCGGCAATATTAGATGCTTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTGTAAATACCAGGCCTTTGGGTGCATGGGCATATATCCTTATTACTGCAAGCTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCAGTGTCATTGGTGATATTCCTTTTCTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCACAAGAAGTTGAAAACGCCACGTGGATGCTTACGGTCTTCAGTTGCTTTGGTCAATATTTTTGTCTACACTTCGAAGCTTTTCAGCTGGGGATGGCTCCAGTCTACATAGCCTTCTTGCGATTTATGGGTGATGATAATGATGCAAAGAACTATAGCTACAGTCTCGAGGTTGGTGGTAATGGGAGGAAGATGACATGGCAGGGCGTGCCTAGAAGCATCAGGGACAGCCACCGCAAAGTTCGTGACAGTTTTGACGGGCTTATCATCCAAAGGAACATGGCCCTCTTCTTTTCCGGGGGAGACAGGAAGGAATTGAAGCTAAGAGTTACGGGGAGAATTTGGAAAGAACAGTGA | 915 | 0.4415 | MASSNPFFDDIQSKSDVDPPSNEEPMDIIELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECSVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNDAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral4606g00046 | 304 | Pfam | Seven in absentia protein family | 98 | 297 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Pral4606g00046 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 108 | IPR013083 | - | |
Pral4606g00046 | 304 | SUPERFAMILY | TRAF domain-like | 109 | 301 | - | - | |
Pral4606g00046 | 304 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 297 | IPR008974 | GO:0005515 | |
Pral4606g00046 | 304 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 39 | 303 | - | - | |
Pral4606g00046 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 164 | IPR013083 | - | |
Pral4606g00046 | 304 | SUPERFAMILY | RING/U-box | 50 | 97 | - | - | |
Pral4606g00046 | 304 | ProSiteProfiles | Zinc finger SIAH-type profile. | 109 | 169 | IPR013010 | GO:0008270 | |
Pral4606g00046 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 108 | 164 | - | - | |
Pral4606g00046 | 304 | CDD | RING-HC_SIAHs | 54 | 92 | - | - | |
Pral4606g00046 | 304 | ProSiteProfiles | Zinc finger RING-type profile. | 56 | 92 | IPR001841 | - | |
Pral4606g00046 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 14 | 107 | - | - | |
Pral4606g00046 | 304 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 165 | 297 | - | - | |
Pral4606g00046 | 304 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Pral4606g00046 | 304 | CDD | Sina | 170 | 298 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral4606g00046 | Pral-Chr4606 | 531140 | 535474 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral4606g00046 | 23 | 304 | C3H Transcription Factor Family | AT2G41980 | 74.296 | 3.82e-161 | 449 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral4606g00046 | K04506 | - | qsa:O6P43_001462 | 603.208 |