Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4603g00040 ATGGAGGAGAAGATAGACGTTGCAGACAGAACGGTGCTGGTTGATATTGTAAAATTGGTACAAAAAAGAAGAATGCAGGGTGCGCTGGGAGACTGGAAAAACTTCTTAATGAGTCATGATAAAAAGTTTGGGTCTAATCTGAGTGATCCAGCAAAGAGGTCCCGTGAGACATTGGTTGCATTTCTAAAGACGTTTTCGAAGGAGGGTGATTTAAAGATATTTGATACCATCCTGCGACGCTATTCTAATAAAGATTTATTTGGGTTATTCAAAGATAAGTCTTGTGACATCCCTGAGCAGAGGCTCGTCCAAAACACTTTGCAGCACCCATCGTATCCATTGGATTATGCATTTGAAGAACTTGATGAGGACTGGGTGGTTATAAACCTTAGGAAAAAAAACATGTTGCTGAAATCTACCAAGATGGTTGCTATTGATTGTGAAATGGTTCTCTGTGAGGATGGGACTGAAGCAGTAGTGAGTCTCTGTGTGGTTGACCGCAATTTGAAGGTTATACTGAAAAAACTTGTACGCCCAAACAAAGCAATTGCTGACTACAGATCAGGGATTACTGGTGTCTGTCCTCAGGATCTTGAAGGTGTCACTTGCTCATTGGCTAACATACAGAATTCCTTGAGAATGATGTTACTGGATGGAACAATATTAGTGGGACATAGTTTGCATAATGATTTACGTGCACTGAAGCTAGATTATGTTAGAGTGATTGATACTTCATATATCTTCCAATACTCTGATGGCAATATTCTCAGGAGACCTTCTTTGAATGCTTTATGTAAGGCTGTGTTAGGCTACGAACTTAGGCAAACAGGTGCTCCGCATAATTGTGTTGATGATGCAATGGCGGCAATGAAACTTGTTCTTGCTAAGATAGAGCGTGGTGTGGATAATGCGATTCCCTTGGCTCAAGAGCCCGTTCAGGTTCCTCAAAGCGAAATGGCTAAACTTCTTCTTCACAAGATATCATCTGGGGTTACTAGTGAAGAACTGTATAAAATTGTTCCTGGGGACTTCATTTTAGAACTGAGGCCGCCTAAAGGGAACAAATATTCTGCCCTCGCCATCTTCAAGAATCCGCAAGAGGCCCATGAGGCCTTTGAAAGTCTCCAAGGCAACCAAGAAAAGGATTCATTTGGACGTCCACAGAAACATGTCACATTCAAACTCAAGGCAGGTGTAAATGCCAGTATATTTGTTCGGAAAATGGCACCTGATGGCCCCAATGACTCTAAGAGAGCTTTAGAAGCGGACGAAACAACAGTGTTGAAGAAAGCAAAGATGGATCCCGAAATTGAAGGGAGAGTCTCAAAGAAAACAAAGATGGATCCAGAAATTGAAGTGAATGCCACGGCCATCTCTAATAAGTGCGACTGCGACACCCACTTGAATGAGATTGAAGCACTAAACCAACGGCTGAAAGAAAATGATTTGGAGATTGAATCGCTGAAGCAACAGTTGAAACAAAAGGATTGTGAAATCTCCATATTGAATAAAATGGTATCTTCCTTGAACAAGAAATTAAGGAAATGA 1548 0.4128 MEEKIDVADRTVLVDIVKLVQKRRMQGALGDWKNFLMSHDKKFGSNLSDPAKRSRETLVAFLKTFSKEGDLKIFDTILRRYSNKDLFGLFKDKSCDIPEQRLVQNTLQHPSYPLDYAFEELDEDWVVINLRKKNMLLKSTKMVAIDCEMVLCEDGTEAVVSLCVVDRNLKVILKKLVRPNKAIADYRSGITGVCPQDLEGVTCSLANIQNSLRMMLLDGTILVGHSLHNDLRALKLDYVRVIDTSYIFQYSDGNILRRPSLNALCKAVLGYELRQTGAPHNCVDDAMAAMKLVLAKIERGVDNAIPLAQEPVQVPQSEMAKLLLHKISSGVTSEELYKIVPGDFILELRPPKGNKYSALAIFKNPQEAHEAFESLQGNQEKDSFGRPQKHVTFKLKAGVNASIFVRKMAPDGPNDSKRALEADETTVLKKAKMDPEIEGRVSKKTKMDPEIEVNATAISNKCDCDTHLNEIEALNQRLKENDLEIESLKQQLKQKDCEISILNKMVSSLNKKLRK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4603g00040 515 Gene3D - 137 306 IPR036397 GO:0003676
Pral4603g00040 515 SUPERFAMILY Ribonuclease H-like 142 297 IPR012337 -
Pral4603g00040 515 SMART exoiiiendus 141 302 IPR013520 -
Pral4603g00040 515 CDD REX1_like 143 294 IPR034922 -
Pral4603g00040 515 Pfam Exonuclease 143 292 IPR013520 -
Pral4603g00040 515 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 13 316 IPR047021 GO:0004527
Pral4603g00040 515 FunFam Small RNA degrading nuclease 3 137 311 - -
Pral4603g00040 515 Coils Coil 464 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4603g00040 Pral-Chr4603 197598 204546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4603g00040 141 292 C2H2 Transcription Factor Family AT2G48100 34.756 6.91e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4603g00040 K14570 - gmx:100785565 609.757