Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4603g00008 ATGATGAACCATCAAGGAGGAATGAGTCACGCGAATTGTAATGCTAATAACCAAAAGAAGGTCAATCATCAGTCCACTGGAGCACTGGAATTGCTTCCTACTGCAAGTTCCCTTGCGGCAGGTGACCAAAGGTTCCCTGATCAGGTTTTGGGGTCAAATCATGTCAGCTATAAAGAGAGTATAAATATTGTTCCAAATAATGATCAGTGTGCTGCTGTTTTTCCCCATGAGTCATCTGAAGCATTGAGCTTTTCTTCTTTAACTTCCCCTACCAGAAATGTTAAATGGTTGCCAGATGGGCTGTCTGGATCAATTGATCTCCATTGTCAAGCAAGTAATAATAGTATTCCAAGCATTGGTGGCAGTGCTGGTGTTGCTCCTCAAAATGTTGACTCAGTTGCAGAATATGCTCGGAACAATTGTTACAACAATTTGAATATGTCTCTGAGTTTAGGCCTTCATTCATATGGACCAGAAAATCAGAATACCAGCAACTCTTATACAACAGTAAATGATCATGGAAGATCAAGTTCTACAGTGCATGAGCAGGGTTTGGATAGCAGCTCAGTGAATATGAGGCGTTTATCCTGCAAGAGAAAGTCTTCTGAACATACTGTCAGAGAATTGTTAGTGGGTGAGAGTTCTAGCACAGCTGCACAAACTGGGATTCCCAAACAGGGGGCTTTTGAAGTCCATGGCAGCAATTGCCTAGACATATCTACTCCTTGTACCAGTCCTGTTAGTCATCAAGAACAGTCTGAGACCATTATTGGTCATGGTACGATAAGGCCATGTTCTGATATGCAGCATTTGAATAGAGCCGGACTATCTGAAAATTTCCAAAGTGATGTTCATCATCATACAGCCAGAAATCAACAAGCTTTTTTACCAACCAACATTTTGTCCTCAGATTACATGAGGAATGCTCATATCCTGGTACCCACTCAGTCACTTTTGTATGGCCAAGACAATCATCCTCCTTTCTTCAGGTTTGCAGAAAGTTCTATTTGTCCGATTTCCTCGGTGCAGCCTGATGAGCATGTTCCTAATCTTCATGAAACTTCACAGGCTCCCCCCTGGATTCATATGATGAGATCAAGTAGTGGTTTTTCTTCATTTTTGCCTGGCTATACTGCACTGGAAAGCGAGGCTGTGGCACCCTGTCATTACCCAAGAAACACAACTGAAAACATCATGCCTAACCAGCAAACTGAAAGGAGAAATTGGGCACTTCATGCAAGAAACTCGCATTTTGTTGATGGAACTGCAAATGTCCATGGAGATTTTTCCTGTCCCCTTCATCGTTTTATTTCTGGTGTACTTCATTCAGAAAATACCCCTACTTGGTTCCCAGGGTCCAGTTTTGCTGATCGTAATGTGCTGACACCATCAAGAATTGTGAATCATACTGTGCTTGCAACTGCTGGTTTCCCTAGGCATATTCACAACCCAGCAGATTCAGACCCTTCACCAGTCCTACAAGAAATGAGCTTTGCCGTTGGACTTGGTAATGCTGTATCCCAGAATCAGCATGCATCAGAAGCAAGATCTGAGAATCACACCGCCCCTAATTTTACATGGTGTCTTGCTAATTCTCCAAATGGAATGAGGCTGAGGCCTGAGAATCTGTATACATCAGAAGCAAGATTGGAGAATCAAGATGATAGCTATGATGATCACCTTTATCATTATTTTTGGTCACCTGCTAATGCTGCGTATAGAAGGAGGCTGAGTCTTGAGCTTCACAATCGCCTTGCACATCTGCGCAGTGTTGACCCCTTGCAGCCTGTGATGATTCCACTGGAATTGAGGATGTTGGACCATTCAGTAGTAATGGATATACTTATGGGGCATAACACCGTAAATGAAGCGCATTTTGATTTAGACGATTGGACGTTTGAGGATCTTGCTGGCCTAACAGAGCCTATTGGCGTACCAGAGGCGGGGTTGAGTGAGGAAATGATTCTCAGCCACCTTAGTCAGGAAAAATTCCAGCCCATCCCAGATGGGTCCGAGGAAAATGAATGCTGCTGCGTATGTCAGGAGGAGTACCAAGAAAATGAAGATCTGGGTAAGCTGTGGTGTGGCCACAGGTTTCACGTAGACTGCATTAAGCCATGGCTAGAGCTGAAGAACAGCTGTCCAATCTGCAAACAAGTTGCGCTTCCTGTTTTCCCTGATTCTCCTTAA 2190 0.4361 MMNHQGGMSHANCNANNQKKVNHQSTGALELLPTASSLAAGDQRFPDQVLGSNHVSYKESINIVPNNDQCAAVFPHESSEALSFSSLTSPTRNVKWLPDGLSGSIDLHCQASNNSIPSIGGSAGVAPQNVDSVAEYARNNCYNNLNMSLSLGLHSYGPENQNTSNSYTTVNDHGRSSSTVHEQGLDSSSVNMRRLSCKRKSSEHTVRELLVGESSSTAAQTGIPKQGAFEVHGSNCLDISTPCTSPVSHQEQSETIIGHGTIRPCSDMQHLNRAGLSENFQSDVHHHTARNQQAFLPTNILSSDYMRNAHILVPTQSLLYGQDNHPPFFRFAESSICPISSVQPDEHVPNLHETSQAPPWIHMMRSSSGFSSFLPGYTALESEAVAPCHYPRNTTENIMPNQQTERRNWALHARNSHFVDGTANVHGDFSCPLHRFISGVLHSENTPTWFPGSSFADRNVLTPSRIVNHTVLATAGFPRHIHNPADSDPSPVLQEMSFAVGLGNAVSQNQHASEARSENHTAPNFTWCLANSPNGMRLRPENLYTSEARLENQDDSYDDHLYHYFWSPANAAYRRRLSLELHNRLAHLRSVDPLQPVMIPLELRMLDHSVVMDILMGHNTVNEAHFDLDDWTFEDLAGLTEPIGVPEAGLSEEMILSHLSQEKFQPIPDGSEENECCCVCQEEYQENEDLGKLWCGHRFHVDCIKPWLELKNSCPICKQVALPVFPDSP 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4603g00008 729 SMART ring_2 677 717 IPR001841 -
Pral4603g00008 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 722 IPR013083 -
Pral4603g00008 729 ProSiteProfiles Zinc finger RING-type profile. 677 718 IPR001841 -
Pral4603g00008 729 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 177 722 IPR045191 GO:0061630
Pral4603g00008 729 MobiDBLite consensus disorder prediction 169 189 - -
Pral4603g00008 729 Pfam Ring finger domain 677 718 IPR001841 -
Pral4603g00008 729 SUPERFAMILY RING/U-box 672 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4603g00008 Pral-Chr4603 33143 41849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4603g00008 577 722 C3H Transcription Factor Family AT2G15530 39.080 1.10e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4603g00008 - - pcin:129295749 1040.41