Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4603g00006 ATGATGAACCATCAAGGAGGAATGAGTCACGCGAATTGTAATGCTAATAACCAAAAGAAGGTCAATCATCAGTCCACTGGAGCACTGGAATTGCTTCCTACTGCAAGTTCCCTTGCGGCAGGTGACCAAAGGTTCCCTGATCAGGTTTTGGGGTCAAATCATGTCAGCTATAAAGAGAGTATAAATATTGTTCCAAATAATGATCAGTGTGCTGCTGTTTTTCCCCATGAGTCATCTGAAGCATTGAGCTTTTCTTCTTTAACTTCCCCTACCAGAAATGTTAAATGGTTGCCAGATGGGCTGTCTGGATCAATTGATCTCCATTGTCAAGCAAGTAATAATAGTATTCCAAGCATTGGTGGCAGTGCTGGTGTTGCTCCTCAAAATGTTGACTCAGTTGCAGAATATGCTCGGAACAATTGTTACAACAATTTGAATATGTCTCTGAGTTTAGGCCTTCATTCATATGGACCAGAAAATCAGAATACCAGCAACTCTTATACAACAGTAAATGATCATGGAAGATCAAGTTCTACAGTGCATGAGCAGGGTTTGGATAGCAGCTCAGTGAATATGAGGCGTTTATCCTGCAAGAGAAAGTCTTCTGAACATACTGTCAGAGAATTGTTAGTGGGTGAGAGTTCTAGCACAGCTGCACAAACTGGGATTCCCAAACAGGGGGCTTTTGAAGTCCATGGCAGCAATTGCCTAGACATATCTACTCCTTGTACCAGTCCTGTTAGTCATCAAGAACAGTCTGAGACCATTATTGGTCATGGTACGATAAGGCCATGTTCTGATATGCAGCATTTGAATAGAGCCGGACTATCTGAAAATTTCCAAAGTGATGTTCATCATCATACAGCCAGAAATCAACAAGCTTTTTTACCAACCAACATTTTGTCCTCAGATTACATGAGGAATGCTCATATCCTGGTACCCACTCAGTCACTTTTGTATGGCCAAGACAATCATCCTCCTTTCTTCAGGTTTGCAGAAAGTTCTATTTGTCCGATTTCCTCGGTGCAGCCTGATGAGCATGTTCCTAATCTTCATGAAACTTCACAGGCTCCCCCCTGGATTCATATGATGAGATCAAGTAGTGGTTTTTCTTCATTTTTGCCTGGCTATACTGCACTGGAAAGCGAGGCTGTGGCACCCTGTCATTACCCAAGAAACACAACTGAAAACATCATGCCTAACCAGCAAACTGAAAGGAGAAATTGGGCACTTCATGCAAGAAACTCGCATTTTGTTGATGGAACTGCAAATGTCCATGGAGATTTTTCCTGTCCCCTTCATCGTTTTATTTCTGGTGTACTTCATTCAGAAAATACCCCTACTTGGTTCCCAGGGTCCAGTTTTGCTGATCGTAATGTGCTGACACCATCAAGAATTGTGAATCATACTGTGCTTGCAACTGCTGGTTTCCCTAGGCATATTCACAACCCAGCAGATTCAGACCCTTCACCAGTCCTACAAGAAATGAGCTTTGCCGTTGGACTTGGTAATGCTGTATCCCAGAATCAGCATGCATCAGAAGCAAGATCTGAGAATCACACCGCCCCTAATTTTACATGGTGTCTTGCTAATTCTCCAAATGGAATGAGGCTGAGGCCTGAGAATCTGTATACATCAGAAGCAAGATTGGAGAATCAAGATGATAGCTATGATGATCACCTTTATCATTATTTTTGGTCACCTGCTAATGCTGCGTATAGAAGGAGGCTGAGTCTTGAGCTTCACAATCGCCTTGCACATCTGCGCAGTGTTGACCCCTTGCAGCCTGTGCAGATGATTCCACTGGAATTGAGGATGTTGGACCATTCAGTAGTAATGGATATACTTATGGGGCATAACACCGTAAATGAAGCGCATTTTGATTTAGACGATTGGACGTTTGAGGATCTTGCTGGCCTAACAGAGCCTATTGGCGTACCAGAGGCGGGGTTGAGTGAGGAAATGATTCTCAGCCACCTTAGTCAGGAAAAATTCCAGCCCATCCCAGATGGGTCCGAGGAAAATGAATGCTGCTGCGTATGTCAGGAGGAGTACCAAGAAAATGAAGATCTGGGTAAGCTGTGGTGTGGCCACAGGTTTCACGTAGACTGCATTAAGCCATGGCTAGAGCTGAAGAACAGCTGTCCAATCTGCAAACAAGTTGCGCTTCCTGTTTTCCCTGATTCTCCTTAA 2193 0.4364 MMNHQGGMSHANCNANNQKKVNHQSTGALELLPTASSLAAGDQRFPDQVLGSNHVSYKESINIVPNNDQCAAVFPHESSEALSFSSLTSPTRNVKWLPDGLSGSIDLHCQASNNSIPSIGGSAGVAPQNVDSVAEYARNNCYNNLNMSLSLGLHSYGPENQNTSNSYTTVNDHGRSSSTVHEQGLDSSSVNMRRLSCKRKSSEHTVRELLVGESSSTAAQTGIPKQGAFEVHGSNCLDISTPCTSPVSHQEQSETIIGHGTIRPCSDMQHLNRAGLSENFQSDVHHHTARNQQAFLPTNILSSDYMRNAHILVPTQSLLYGQDNHPPFFRFAESSICPISSVQPDEHVPNLHETSQAPPWIHMMRSSSGFSSFLPGYTALESEAVAPCHYPRNTTENIMPNQQTERRNWALHARNSHFVDGTANVHGDFSCPLHRFISGVLHSENTPTWFPGSSFADRNVLTPSRIVNHTVLATAGFPRHIHNPADSDPSPVLQEMSFAVGLGNAVSQNQHASEARSENHTAPNFTWCLANSPNGMRLRPENLYTSEARLENQDDSYDDHLYHYFWSPANAAYRRRLSLELHNRLAHLRSVDPLQPVQMIPLELRMLDHSVVMDILMGHNTVNEAHFDLDDWTFEDLAGLTEPIGVPEAGLSEEMILSHLSQEKFQPIPDGSEENECCCVCQEEYQENEDLGKLWCGHRFHVDCIKPWLELKNSCPICKQVALPVFPDSP 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4603g00006 730 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 177 723 IPR045191 GO:0061630
Pral4603g00006 730 Pfam Ring finger domain 678 719 IPR001841 -
Pral4603g00006 730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 723 IPR013083 -
Pral4603g00006 730 MobiDBLite consensus disorder prediction 169 189 - -
Pral4603g00006 730 SUPERFAMILY RING/U-box 673 725 - -
Pral4603g00006 730 SMART ring_2 678 718 IPR001841 -
Pral4603g00006 730 ProSiteProfiles Zinc finger RING-type profile. 678 719 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4603g00006 Pral-Chr4603 33143 41850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4603g00006 577 723 C3H Transcription Factor Family AT2G15530 39.429 1.48e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4603g00006 - - pcin:129295749 1035.79