Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4603g00005 ATGGGGGATATGTACGGCCATGGAAAGAGTAACATTATTCCCTCTTCATCTCCTTCTTCAACCTTACCTCCCGACGAATTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTCCCCCCTCCTCCGCCGTCGTACCGCCACCGTCTTCCCTCCTCACCCACATGCCTGAGAACGCGCCTAACACTTCTGAGCATGAAAATGCAAGCCTTTCGTACCCATCTTCTCTGCTTCAAGACGTAATCTCAGGTGTTAATTCTACATCTAAAAACCATGCCTTTCTCTCGTCTTATATCCAGGGAGGTTCTGCTGCAAATGTGTCTTCCTCCTCGGTCGGAGTAAGTGGGAATGAGACTGATGAGTATGATTGTGAAAGTGAGGGGGGCACGGTTGAAGCAATGGTTGCGAAGTCAGTTCCTCCCAGGCGTTCATCGAAGAGAAGCAGAGCTGCGGAAGTTCATAACTTGTCTGAGAAGCGAAGGAGGAGTCGGATCAACGAAAAGCTGAAGGCTTTGCAGAATCTAATTCCAAATTCAAATAAGACTGATAAAGCTTCAATGCTCGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTCCAGATGCTGTCTGTGAGAAATGGATTGAATATGCTTCCCGTGTGCTTTGCCGAAGGCTTGCAGCCTCTGCAGTTGTCTCAGATGAGAGTTGAATATGGTGAAGAAGAAGACGGGTCATGTCCTTTAAACTCAACTGCTACTATGCCTCTTGACCATTCATCCAATCTATCTAACAAACACACTGTGCCTTCCCCATCAAATATAATCAACGCAGAAACACCTTTTGGGTTGGATTCCCAAATCATCGGGCATCTTAGACCCTTTGAACTCACAACAACATCATCTTCTGAGATATGCAGGGAGGACATATTGCAGCACCAGCAATTAAATGCAGGAGATTCATATACCAATCCTTTAGGTGATTCTCAAGCCCCCTCAGCTGTACGAGACTGA 993 0.4612 MGDMYGHGKSNIIPSSSPSSTLPPDEFSLFLHQILLPPPSSAVVPPPSSLLTHMPENAPNTSEHENASLSYPSSLLQDVISGVNSTSKNHAFLSSYIQGGSAANVSSSSVGVSGNETDEYDCESEGGTVEAMVAKSVPPRRSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSVRNGLNMLPVCFAEGLQPLQLSQMRVEYGEEEDGSCPLNSTATMPLDHSSNLSNKHTVPSPSNIINAETPFGLDSQIIGHLRPFELTTTSSSEICREDILQHQQLNAGDSYTNPLGDSQAPSAVRD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4603g00005 330 SMART finulus 153 202 IPR011598 GO:0046983
Pral4603g00005 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 144 206 IPR036638 GO:0046983
Pral4603g00005 330 MobiDBLite consensus disorder prediction 1 20 - -
Pral4603g00005 330 Gene3D - 142 206 IPR036638 GO:0046983
Pral4603g00005 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Pral4603g00005 330 MobiDBLite consensus disorder prediction 42 68 - -
Pral4603g00005 330 MobiDBLite consensus disorder prediction 139 159 - -
Pral4603g00005 330 MobiDBLite consensus disorder prediction 309 323 - -
Pral4603g00005 330 MobiDBLite consensus disorder prediction 53 68 - -
Pral4603g00005 330 Pfam Helix-loop-helix DNA-binding domain 151 197 IPR011598 GO:0046983
Pral4603g00005 330 FunFam Basic helix-loop-helix transcription factor 142 205 - -
Pral4603g00005 330 MobiDBLite consensus disorder prediction 309 330 - -
Pral4603g00005 330 CDD bHLH_AtPIF_like 147 209 IPR047265 -
Pral4603g00005 330 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 23 304 IPR031066 -
Pral4603g00005 330 MobiDBLite consensus disorder prediction 143 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4603g00005 Pral-Chr4603 26837 29879 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4603g00005 115 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 51.402 9.35e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4603g00005 HLH 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4603g00005 - - pcin:129295751 502.671