Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4602g00002 ATGGACGTGGATGACAGAAGCATGGACATGATGGCAATGATGATGCAGATGGAAAAGTTTCCTGAGTTCTCTGAACCTTTTTACCCAGAACCTCCATTCTCCACCACCGCCGCCGCCGCCAACACCAGTATGCCCATACTCTCCAATAACATGATCAATCCTCCTCTACCTAGTAATCCCTTTGTGGCCAACACTATTAATCCAAGCCCACACCTGATTCCACCCAATAAAGACGTTGAGTTCAGGAATATTACTGACAGTCCCAATGCTTCTTCTTCATCTTCTGAGAAGAAGAATTCCATGGCGGCGATGAGAGAAATGATATTTCGTATAGCAGTGATGCAGCCCATTCACATAGACCCGGAATCCATTAAGCCTCCGAAGAGAAGGAACGTGAAGATATCGAAGGATCCGCAAAGCGTGGCGGCGAGGCACAGGAGGGAGAGAATAAGCGAAAGGATTAGGATTCTGCAGAGATTAGTTCCTGGAGGGACCAAAATGGACACGGCCTCAATGTTGGACGAAGCTATACATTACGTTAAGTTCTTGAAGAAGCAAGTTCAGACGCTGGAACAGGCAGGAGCGAGTAGAGCTGTGGGTTTTGGGGTACCTAGCTTCAGTATGAATAATTATTCTACTTTCATGAAGGATTACCACCAACCTTCTCAGATGGTGGTGGGTAGTTCTATGCAAATGCTAAGCTGA 705 0.4652 MDVDDRSMDMMAMMMQMEKFPEFSEPFYPEPPFSTTAAAANTSMPILSNNMINPPLPSNPFVANTINPSPHLIPPNKDVEFRNITDSPNASSSSSEKKNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGASRAVGFGVPSFSMNNYSTFMKDYHQPSQMVVGSSMQMLS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4602g00002 234 MobiDBLite consensus disorder prediction 67 99 - -
Pral4602g00002 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 138 193 IPR036638 GO:0046983
Pral4602g00002 234 Gene3D - 133 198 IPR036638 GO:0046983
Pral4602g00002 234 MobiDBLite consensus disorder prediction 82 99 - -
Pral4602g00002 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Pral4602g00002 234 FunFam BHLH transcription factor 137 199 - -
Pral4602g00002 234 Coils Coil 173 193 - -
Pral4602g00002 234 Pfam Helix-loop-helix DNA-binding domain 143 183 IPR011598 GO:0046983
Pral4602g00002 234 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 59 221 IPR045843 GO:0003700|GO:0006355
Pral4602g00002 234 SMART finulus 140 189 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4602g00002 Pral-Chr4602 18536 19240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4602g00002 1 202 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.542 8.91e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4602g00002 HLH 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4602g00002 - - qsa:O6P43_033826 220.32