Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4601g00008 ATGACGCAGCGGTCGGTGCCGGCGCCGTTTCTGACGAAAACATACCATTTGGTGGACGATGAGCTGACCAACGACGTGATATCGTGGAACGAAAGCGGCGACACGTTCGTGGTGTGGAAGCAAGCGGATTTTGCCAAGGATTTGCTTCCCAATTATTTCAAGCACAACAATTTCTCCAGCTTTGTTCGTCAGCTCAACACTTATGGATTCCGAAAGATAGTCCCCGACAAATGGGAATTCGCGAACGAACATTTCAAGCGAGGACGCAAGGAGCTCCTCTCCGAGATCAAACGCCGGAAGAATCCCTCGCAACCATCGGCGCAGGCCTCCGGGAAGTCCGGAAGCGGCGGGGGCGGGAATTCCGCGTCGAACTCCGGAGCCGGCGACGACGTGGGGTCCACCTCCACTTCATCGACTGATTCGAAGAATAAGCCGGGGTCGGCGGAGACGAAAACGGGTGCAGAATACGCAGAGCTATCAGGAGAGAATGAGAAGCTGAGAAAAGATAATGAGATGCTGAGCTCGGAGCTAGCGGAAGCGAAGAGGCAGTGCGAGGAGCTGGTGGGTTTTCTGACGAAGTACCTCAAAGTGGGGCCCGATCAGATCAATCGCCTAATGCGGCAAGGAACAAGTGGGTCCAGCCGCGAAGAAGAAGAAGAAGAAGGACAAGAAGATGAGGACGAGACAAAGGCGGTAGGTGAAGGCGGAGAAAGTCTGAAACTATTTGGGGTTTGGTTGAGAGGTGAGAAAGAAACGACGAAGGAGGAGGAGGAGAAAATGAGGAGCAACGACCATAAGAAGAGAGGGCGAGAAGACCAGATGGCCTTTGCTGGGGCCCTCCCATCGAAGGGGCTGAAGACCGTGCATTTTGGTGCATCCCCTGTGAAGGTCATGATCAACTGA 903 0.5404 MTQRSVPAPFLTKTYHLVDDELTNDVISWNESGDTFVVWKQADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGRKELLSEIKRRKNPSQPSAQASGKSGSGGGGNSASNSGAGDDVGSTSTSSTDSKNKPGSAETKTGAEYAELSGENEKLRKDNEMLSSELAEAKRQCEELVGFLTKYLKVGPDQINRLMRQGTSGSSREEEEEEGQEDEDETKAVGEGGESLKLFGVWLRGEKETTKEEEEKMRSNDHKKRGREDQMAFAGALPSKGLKTVHFGASPVKVMIN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4601g00008 300 Coils Coil 156 183 - -
Pral4601g00008 300 Gene3D - 2 100 IPR036388 -
Pral4601g00008 300 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Pral4601g00008 300 MobiDBLite consensus disorder prediction 217 231 - -
Pral4601g00008 300 MobiDBLite consensus disorder prediction 99 148 - -
Pral4601g00008 300 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4601g00008 300 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4601g00008 300 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4601g00008 300 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4601g00008 300 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4601g00008 300 FunFam Heat stress transcription factor B-4 2 100 - -
Pral4601g00008 300 MobiDBLite consensus disorder prediction 247 273 - -
Pral4601g00008 300 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral4601g00008 300 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 249 IPR027725 -
Pral4601g00008 300 Gene3D - 150 194 - -
Pral4601g00008 300 MobiDBLite consensus disorder prediction 198 280 - -
Pral4601g00008 300 MobiDBLite consensus disorder prediction 95 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4601g00008 Pral-Chr4601 186112 189228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4601g00008 3 258 HSF AT4G36990 57.031 2.70e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral4601g00008 HSF_DNA-bind 1.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4601g00008 K09419 - twl:119999524 335.88