Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral45g00012 ATGGAGATGCAACAGCTTCTGAGCATGGGGTTCCCAGATGAGTTAGCAGCCCAAGCCTTAGCTGCTACTGGCGGCAAATCCACCATTGAGGCCACCGAATGGATCTTCAACCACAAAGCCACTTCTTCTAACCATGTCTCTAACTCAAACCCTCCTCCAGTTCAGCCAAAACTCGATCGCTTTTTTAATTTTCAATCCAAACTCTCTTCTGCAGTCACAGCCTCATCACAAGCTTGTCAACAAGAAGAACAAGAAGATGCAGATTTAGATTTAGAAGAATCAGCACCAAACGTTAATCCGTCATCCAAACGTCTCAAACTTTCTCCATCTAACACCAAACCCGCTTCTCCCGTCTTTCTGAATCATTTTCGTGGTCATAAGAGTGCTAATAATGTTTCTAATGCCAAATCCCACGAGCCCTTATATGAGCGAATGCGTCCCAGAACCATTGATGATGTTATCGGTCAGGACCATTTGGTTGCTTCTAATTCGCTCCTTCGCTCCGCAATTGAATGCGGCCGCCTCCCTTCGATTATCTTCTGGGGTCCTCCTGGTACAGGTAAGACTTCTATTGCTAAAGCAATCGTGAATTCAGCAACTTCTTCTCAGAAACAGCAATGCCCCTCTTATCGCTTTGTTTCGTTATCTGCTGTGACTAGTGGTGTTAAAGATGTGAGGGATGCCGTTGATGAGGCTAGGAAATTGAGAGTTAAGTGTAAGCAAAGAACTGTTCTATTTGTGGATGAGGTTCACAGGTTTAACAAGTCTCAACAGGACTCTTTTTTGCCGGTCATTGAAGATGGAAGTATTGTCTTCGTTGGGGCCACTACTGAAAACCCCTCTTTCCATTTGATAACGCCTTTGCTGTCTCGGTGTCGTGTACTTACTCTAAACCCCTTGAAACCCCACCATGTTGTGATGATTCTAAAGGGGGCTGTGAATAATCTGGACAAAGGATTGGTGCAGAGCATTGGTTTTCAAGTTGATGTAGTTGAAGATGTAATTAGTTTTATAGCCAACAATTGTGATGGTGATGCGCGGGTGGCATTGAATGCGTTGGAGATTGCTGCTGTTACAGCGGCCGCTCGGTCACAAGATGATAAGAAGTCTAAGGATGTCAAAGAAACAGAAGACATGGATGGTCTAATGAGCCAAAAAAATAGAGTTGGTCCATCTTATAATATCGTTACTCTGGATGATGCAAAAGAGGCGCTTCAGTGCAAGCACCTTGCTTATGATAAAGCTGGGGAAGAGCATTATAATCTAATTAGCGCACTGCACAAATCAATGAGGGGAAGTGATGCCAATGCTGCAATTTATTGGTTGGCAAGAATGTTGGAAGGAGGCGAAGAGCCTCTTTATATTGCACGGAGGTTGATAAGGTTTGCAAGTGAGGACATTGGATTGGCTGATCCATCTGCTCTCAATCAGGCTGTTTCATGTTACCAAGCCTGCCACTTCTTGGGTATGCCTGAATGTAATGTGATTCTTGCACAATGTGTTGCTTATTTGGCCCTAGCTCCTAAATCTATTGCTGTATATCGAGCAATAGAAGCTGCTCAGAAGGTTGTCAAGGAATCAATTGGACAGAATGAGGGAGTGCCTCTTCATCTAAGAAATGCCCCAAGTAAACTAATGGAGGAACTTGGCTACGCGAAGGGATACATATACACTCCCGATAATCCCACTTTGGCCCAGAACTATTTGCCACCCTCACTAAATGGGTACATGTTCCTTGATTGGCCTGACAAGAATACATCTGACGGTCAAAAAAGTTCAAAGCAATGTTGGCAGCTTTCATAG 1803 0.4409 MEMQQLLSMGFPDELAAQALAATGGKSTIEATEWIFNHKATSSNHVSNSNPPPVQPKLDRFFNFQSKLSSAVTASSQACQQEEQEDADLDLEESAPNVNPSSKRLKLSPSNTKPASPVFLNHFRGHKSANNVSNAKSHEPLYERMRPRTIDDVIGQDHLVASNSLLRSAIECGRLPSIIFWGPPGTGKTSIAKAIVNSATSSQKQQCPSYRFVSLSAVTSGVKDVRDAVDEARKLRVKCKQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVVMILKGAVNNLDKGLVQSIGFQVDVVEDVISFIANNCDGDARVALNALEIAAVTAAARSQDDKKSKDVKETEDMDGLMSQKNRVGPSYNIVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDIGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSIAVYRAIEAAQKVVKESIGQNEGVPLHLRNAPSKLMEELGYAKGYIYTPDNPTLAQNYLPPSLNGYMFLDWPDKNTSDGQKSSKQCWQLS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral45g00012 600 Gene3D - 2 40 - -
Pral45g00012 600 Gene3D - 128 298 IPR027417 -
Pral45g00012 600 Gene3D - 300 375 - -
Pral45g00012 600 Pfam ATPase family associated with various cellular activities (AAA) 178 294 IPR003959 GO:0005524|GO:0016887
Pral45g00012 600 SUPERFAMILY post-AAA+ oligomerization domain-like 416 585 IPR008921 GO:0003677|GO:0006260
Pral45g00012 600 SUPERFAMILY UBA-like 3 39 IPR009060 GO:0005515
Pral45g00012 600 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Pral45g00012 600 MobiDBLite consensus disorder prediction 80 112 - -
Pral45g00012 600 CDD AAA 154 293 - -
Pral45g00012 600 MobiDBLite consensus disorder prediction 95 112 - -
Pral45g00012 600 Pfam MgsA AAA+ ATPase C terminal 432 582 IPR021886 -
Pral45g00012 600 Pfam UBA/TS-N domain 4 35 IPR015940 -
Pral45g00012 600 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 591 - -
Pral45g00012 600 FunFam Replication-associated recombination protein A 132 299 - -
Pral45g00012 600 Pfam AAA C-terminal domain 327 431 IPR032423 -
Pral45g00012 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 136 372 IPR027417 -
Pral45g00012 600 CDD HLD_clamp_RarA 300 364 - -
Pral45g00012 600 FunFam AAA-type ATPase family protein 300 377 - -
Pral45g00012 600 Gene3D - 510 598 - -
Pral45g00012 600 Gene3D - 406 509 - -
Pral45g00012 600 SMART AAA_5 174 300 IPR003593 GO:0016887
Pral45g00012 600 FunFam Putative AAA family ATPase 406 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral45g00012 Pral-Chr45 435970 438393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral45g00012 138 354 Core DNA Replication Machinery Family AT1G63160 26.364 9.03e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral45g00012 K07478 - qsu:112015639 797.349