Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4599g00040 ATGTCATCATCGAAAACTCCGTGTGCCGCGTGCAAGCTTCAGAGGCGAAAATGCACTCAAGAATGCGTCTTCGCACCATACTTCCCGCCGGACAACCCTCGCAAGTTCTCTAACGTCCAACAGGTGTTCGGCGCTAGCAATGTTTCTAAGCTTCTCACCGAGCTCAACGTGGCTCACCGCGAAGAAGCCGTCAGGTCTTTGGCTTACGAAGCCGAGGCTCGGCTCCGAGATCCAGTCTACGGCTGCGTCGGCCTCATCTCTGTGCTCCAGCAGAGGCTGAGGCATGTACAAAATGAAGTCGACAAGGCGAAGAAGGAGCTCGCTACTTATATAGGCCCTCAGGCTCTACAACCCATGGTTCCCGTTTTAGACCCTCATCATGGAATGGTCCCGCTTCACCCTAACCACCAGGGCAATGTTTATGGTCCCTCAGTTTTCCCGTACAATAACATGCCGCCGCAGGCTATGGCGGCGCGCGGCGGACAACTGGTGATTCGTGAACCTCAGCAGCAGCATCGTGACGAGCAGCAGATGTTGGGGTCGCAGTTAGCGACGGATATGGAGGTGAGGCAGGTGCAAGAGTTGTTTGGGATTTATGATCAGCAACAACAACCGCCGACGACGCAGCAGCAGCAGAAGGACTTTATGAGTTACGGTGGCGGAGGGGGAGCTGAAATGGGCTCGGTTTCTGGGAGTGGGTTTAATCAACCTCCAGAAATGTCGCCATCGCTGGCTTTGAACACATATGACAACACTTACCGTTCAGTACAACTACAGCAAAGCCAAGGAGGAGATCAGCAGCATCACCATCATCAACCTCCGCGCCACCATCTTCAAGAACAGATGCTTCTACCGCCGCAGCAGCCACACAGCCACTTTTATCGCCGCAGCAACTGCAACCGCAGCCTCCGGCCCATCAGCTTCAGGCGCAGCAGCATCAACATCACCGTCATCAGCTTCAGGAGCAGCTGTTTCTACGGCCACAACAACCGCAACCGTATCAGGATCAGCATCAACATCATCAGCCTCCGCACAATCAGCTTCAGGAGCAGCTGCTTTTACAGCCGCATCAACATCAAGAGCAATCGGAGGACACGGATGGTAGGAGCGTCGGTCCTTCTTGATTTTCCAGTTCTGCAGATTTTGCGCCTTAGACAGTATCGTCCAACATTTTTAACTTTGTTCTTACCAGATGATTTCGCAGAGATGATGTTCCCAGAGATATATGGGCAAATATTGCGTACGTGTGACCCTGCATAA 1260 0.5302 MSSSKTPCAACKLQRRKCTQECVFAPYFPPDNPRKFSNVQQVFGASNVSKLLTELNVAHREEAVRSLAYEAEARLRDPVYGCVGLISVLQQRLRHVQNEVDKAKKELATYIGPQALQPMVPVLDPHHGMVPLHPNHQGNVYGPSVFPYNNMPPQAMAARGGQLVIREPQQQHRDEQQMLGSQLATDMEVRQVQELFGIYDQQQQPPTTQQQQKDFMSYGGGGGAEMGSVSGSGFNQPPEMSPSLALNTYDNTYRSVQLQQSQGGDQQHHHHQPPRHHLQEQMLLPPQQPHSHFYRRSNCNRSLRPISFRRSSINITVISFRSSCFYGHNNRNRIRISINIISLRTISFRSSCFYSRINIKSNRRTRMVGASVLLDFPVLQILRLRQYRPTFLTLFLPDDFAEMMFPEIYGQILRTCDPA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4599g00040 419 MobiDBLite consensus disorder prediction 199 216 - -
Pral4599g00040 419 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pral4599g00040 419 MobiDBLite consensus disorder prediction 229 267 - -
Pral4599g00040 419 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 212 - -
Pral4599g00040 419 Coils Coil 86 106 - -
Pral4599g00040 419 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pral4599g00040 419 MobiDBLite consensus disorder prediction 199 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4599g00040 Pral-Chr4599 309481 312802 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4599g00040 1 236 AS2 family AT5G66870 49.174 3.81e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral4599g00040 LOB 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4599g00040 - - pcin:129311998 435.647