Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4599g00015 ATGGGAAATATGGAAATGACCAATTTTGGGATGACCATCGTAATGCAGAGGCGATCGTCTGAAGTTGTAACAGTGGCAAACTGGGTGCAGGATGATTTAAATGATACTGAGAAAGAAGACATCGACTGGGCAATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAGGTTATTGAGTATGCCTCACAGTCAGAAGATGAAGAACTTTGTCCAATTGATGAGGAGGAAGATGAACATCTTGGTAAAGTTCAAGAAGAGGAAGCTGAAATTCCTGCTAACATTCAAAAGGAGGAAGATGAACATGACGCAAATCTTCAACTTGAGGAAGATGAGCAACTTGCGAGAGCAATTCAAGAAAGTCTAAGCATGGGTTCTCCTCCTCGATATGATGCAGGGTCTTCATTTCAACCATTTTCTCTATTTTCCACTGGATACAGGATCTGTGCTGGCTGCAACGCTGAGATTGGCCATGGAAGATTTTTAAGCTGTATGGGAGGCGTCTGGCATCCAGAATGTTTTCGTTGTCAAGCTTGCAATCTTCCAATTACTGATCACGAGTTTTCTATGTCTAGCAATCGCCCTTACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACAAATTCAGCTGGCCTCATTGAATATAGAGCACATCCTTTTTGGCTACAAAAATACTGTCCATCACATGAGCGTGATGGCACTCCTCGCTGCTGTAGCTGTGAAAGAATGGAGTCAAGGGACGCAAAGTATCTTTTGCTGGATGATGGCCGGAAGCTATGCCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTTTATGAAGGTTTGAACATGAAAGTGGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCAATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTGAGGAGACCAAAGATTGGCGCAGGCTACCGAATCATGGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTATATGGCCTTCCGAGGTTGTTAACGGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCCGGCTTAAAGGTTACCCTAGTCTGAGACCCGAAGTTGAAGAGGGAATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGGATCTGGGGGCGACGGTGCATCATCTTCGACGTCATCTTCATCATCATCCTCACCTTCCTCCTCATGCTCCACATCATCAAAGAAGGGCAAAAGGTCTGACTTTGAGAAGAAACTGGGCGAGTTTTTTAAACACCAGATTGAGTCTGATACCTCATCAGCTTATGGAGATGGATTCAGATCGGGTAACCAGGCAGTACTCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCAACTGACAGGAACTTTTCCAGTATGA 1566 0.4406 MGNMEMTNFGMTIVMQRRSSEVVTVANWVQDDLNDTEKEDIDWAIALSLSEEDQKGKKVIEYASQSEDEELCPIDEEEDEHLGKVQEEEAEIPANIQKEEDEHDANLQLEEDEQLARAIQESLSMGSPPRYDAGSSFQPFSLFSTGYRICAGCNAEIGHGRFLSCMGGVWHPECFRCQACNLPITDHEFSMSSNRPYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPKIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPSLRPEVEEGICQVLAHMWLDSEIYSGSGGDGASSSTSSSSSSSPSSSCSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAVLKYGLRRTLDHIQLTGTFPV 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4599g00015 521 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 110 129 IPR003903 -
Pral4599g00015 521 CDD LIM_DA1 150 202 - -
Pral4599g00015 521 FunFam Protein DA1-related 1 144 203 - -
Pral4599g00015 521 ProSitePatterns LIM zinc-binding domain signature. 150 184 IPR001781 -
Pral4599g00015 521 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 36 55 IPR003903 -
Pral4599g00015 521 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 143 175 - -
Pral4599g00015 521 Gene3D Cysteine Rich Protein 140 208 - -
Pral4599g00015 521 Pfam LIM domain 150 205 IPR001781 -
Pral4599g00015 521 SMART uim 110 129 IPR003903 -
Pral4599g00015 521 SMART uim 36 55 IPR003903 -
Pral4599g00015 521 Pfam Protein DA1 299 515 IPR022087 -
Pral4599g00015 521 SMART lim_4 149 201 IPR001781 -
Pral4599g00015 521 MobiDBLite consensus disorder prediction 439 463 - -
Pral4599g00015 521 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 176 231 - -
Pral4599g00015 521 ProSiteProfiles LIM domain profile. 148 208 IPR001781 -
Pral4599g00015 521 PANTHER PROTEIN DA1-RELATED 2 31 520 IPR045218 -
Pral4599g00015 521 MobiDBLite consensus disorder prediction 439 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4599g00015 Pral-Chr4599 60260 65338 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4599g00015 DA1-like 7.8e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4599g00015 - - gmx:100817969 810.831