Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4599g00013 ATGGGTTGGTTTACAAAGCTGATGAAGGGCTCCAACCATAAAATTTCAAGGGGACATTACCATGGGAAATATGGAAATGACCAATTTTGGGATGACCATCGTAATGCAGAGGATGATTTAAATGATACTGAGAAAGAAGACATCGACTGGGCAATTGCACTCTCTCTGTCAGAGGAGGATCAGAAAGGGAAAAAGGTTATTGAGTATGCCTCACAGTCAGAAGATGAAGAACTTTGTCCAATTGATGAGGAGGAAGATGAACATCTTGGTAAAGTTCAAGAAGAGGAAGCTGAAATTCCTGCTAACATTCAAAAGGAGGAAGATGAACATGACGCAAATCTTCAACTTGAGGAAGATGAGCAACTTGCGAGAGCAATTCAAGAAAGTCTAAGCATGGGTTCTCCTCCTCGATATGATGCAGGGTCTTCATTTCAACCATTTTCTCTATTTTCCACTGGATACAGGATCTGTGCTGGCTGCAACGCTGAGATTGGCCATGGAAGATTTTTAAGCTGTATGGGAGGCGTCTGGCATCCAGAATGTTTTCGTTGTCAAGCTTGCAATCTTCCAATTACTGATCACGAGTTTTCTATGTCTAGCAATCGCCCTTACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACAAATTCAGCTGGCCTCATTGAATATAGAGCACATCCTTTTTGGCTACAAAAATACTGTCCATCACATGAGCGTGATGGCACTCCTCGCTGCTGTAGCTGTGAAAGAATGGAGTCAAGGGACGCAAAGTATCTTTTGCTGGATGATGGCCGGAAGCTATGCCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTACCTTGAAATACAAGAGTTTTATGAAGGTTTGAACATGAAAGTGGAGCAGCAAGTTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAGGCAATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCAGAAGAGCAGACTGTCACCACTATTTTGAGGAGACCAAAGATTGGCGCAGGCTACCGAATCATGGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTATATGGCCTTCCGAGGTTGTTAACGGGATCAATCCTGGCTCATGAGATGATGCATGCATGGCTCCGGCTTAAAGGTTACCCTAGTCTGAGACCCGAAGTTGAAGAGGGAATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGGATCTGGGGGCGACGGTGCATCATCTTCGACGTCATCTTCATCATCATCCTCACCTTCCTCCTCATGCTCCACATCATCAAAGAAGGGCAAAAGGTCTGACTTTGAGAAGAAACTGGGCGAGTTTTTTAAACACCAGATTGAGTCTGATACCTCATCAGCTTATGGAGATGGATTCAGATCGGGTAACCAGGCAGTACTCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCAACTGACAGGAACTTTTCCAGTATGA 1587 0.4379 MGWFTKLMKGSNHKISRGHYHGKYGNDQFWDDHRNAEDDLNDTEKEDIDWAIALSLSEEDQKGKKVIEYASQSEDEELCPIDEEEDEHLGKVQEEEAEIPANIQKEEDEHDANLQLEEDEQLARAIQESLSMGSPPRYDAGSSFQPFSLFSTGYRICAGCNAEIGHGRFLSCMGGVWHPECFRCQACNLPITDHEFSMSSNRPYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPKIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPSLRPEVEEGICQVLAHMWLDSEIYSGSGGDGASSSTSSSSSSSPSSSCSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAVLKYGLRRTLDHIQLTGTFPV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4599g00013 528 Pfam LIM domain 157 212 IPR001781 -
Pral4599g00013 528 ProSitePatterns LIM zinc-binding domain signature. 157 191 IPR001781 -
Pral4599g00013 528 SMART lim_4 156 208 IPR001781 -
Pral4599g00013 528 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Pral4599g00013 528 CDD LIM_DA1 157 209 - -
Pral4599g00013 528 PANTHER PROTEIN DA1-RELATED 2 3 527 IPR045218 -
Pral4599g00013 528 Pfam Protein DA1 306 522 IPR022087 -
Pral4599g00013 528 MobiDBLite consensus disorder prediction 446 470 - -
Pral4599g00013 528 SMART uim 43 62 IPR003903 -
Pral4599g00013 528 SMART uim 117 136 IPR003903 -
Pral4599g00013 528 ProSiteProfiles LIM domain profile. 155 215 IPR001781 -
Pral4599g00013 528 MobiDBLite consensus disorder prediction 446 473 - -
Pral4599g00013 528 Gene3D Cysteine Rich Protein 147 214 - -
Pral4599g00013 528 FunFam Protein DA1-related 1 151 210 - -
Pral4599g00013 528 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 182 - -
Pral4599g00013 528 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 238 - -
Pral4599g00013 528 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4599g00013 Pral-Chr4599 60260 66480 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral4599g00013 DA1-like 8.1e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4599g00013 - - gmx:100817969 869.381