Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4599g00008 ATGAGTGGGTTAAAAATGAATGTGATTGACCAGTGCTGGAGATTGAAGCCAGAATGGAGGAGACACAGAACACAACTTGCCACCTGCTCTGTGGGCTACGCAGGCAAGATGACAAATAACATTGGGAAGGATGTTGTCCACTATAAAGTCACGGATCCAAGTGACGACCCCGTTAACCCGAAACCCGGAACTTTGAGATACGGAGCCTCTGTGATCCAAGGCAAAGTCTGGATCACCTTCCAAACAGACATGCGCATCAACCTTGCCAGACCCCTTCTCATCAGCAGCTTCACTGCCATTGATGGCCGAGGCGTTGAAGTCCACATTGCTCATAACGCTTGCTTGATGATCCACAAGGCAACTAACATAATCATCCATGGACTTCGGATCCATCACTGCAAGCCTCAAGGTCCAGGGATGGTAATGGGTGGTGAAGGGAAGGTGATATCTCTGGGTCAGGTAGATGGAGATGCAATCAGATTGGTTTCGGCTTCGAAGATTTGGATCGATCACAACACTCTCTATAGATGCTCAGATGGCCTTCTGGACGTCACAAGAGGCTCTACTGACGTGACTGTGTCGAATAACTGGTTCAGAGATCAAGACAAGGTTATGCTTCTTGGGCACGATGATGGCTACGTCAGAGACCAGAACATGAAGGTCACTGTAGTCTACAACCATTTTGGACCTAATTGCAACCAACGCATGCCCAGGATACGACATGGGTATGCTCATGTAGCCAACAATCTGTACCAAGGTTGGATGCAATACGCCATTGGTGGCAGCATGGAGCCCAGCCTCAAAAGTGAAGCTAACCTCTTCATAGCACCAACCTCGGGGAATAAAGAGGTGACGTGGAGAAAAAGTAGTAATGGAAATGAGAAAGCATCAGAATTTTATTCAGTGAGGGACGTCTTTGAGAACGGAGCTTCCTTCGCTGTAACACAAGGTGGACACGTGCCAAAGCCTAATTATAACGCTGAACAAAGGTTCAAAGTCGCAGATGCTACATGTGTTAGGCCACTGACTATCTCAGCAGGCGCATTACGATGCAGTAAAACCTCGAGGTGCTGA 1074 0.4795 MSGLKMNVIDQCWRLKPEWRRHRTQLATCSVGYAGKMTNNIGKDVVHYKVTDPSDDPVNPKPGTLRYGASVIQGKVWITFQTDMRINLARPLLISSFTAIDGRGVEVHIAHNACLMIHKATNIIIHGLRIHHCKPQGPGMVMGGEGKVISLGQVDGDAIRLVSASKIWIDHNTLYRCSDGLLDVTRGSTDVTVSNNWFRDQDKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSMEPSLKSEANLFIAPTSGNKEVTWRKSSNGNEKASEFYSVRDVFENGASFAVTQGGHVPKPNYNAEQRFKVADATCVRPLTISAGALRCSKTSRC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 29 46 IPR018082 -
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 297 321 IPR018082 -
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 257 276 IPR018082 -
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 235 254 IPR018082 -
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 328 351 IPR018082 -
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 155 176 IPR018082 -
Pral4599g00008 357 PRINTS Pollen allergen Amb family signature 91 107 IPR018082 -
Pral4599g00008 357 SMART amb_all 83 280 IPR002022 -
Pral4599g00008 357 Pfam Pectate lyase 101 274 IPR002022 -
Pral4599g00008 357 Gene3D - 6 350 IPR012334 -
Pral4599g00008 357 PANTHER PECTATE LYASE 18-RELATED 5 354 IPR045032 GO:0030570
Pral4599g00008 357 SUPERFAMILY Pectin lyase-like 28 352 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4599g00008 Pral-Chr4599 48293 49776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4599g00008 37 284 Polysaccharide Lyase AT5G09280 73.387 2.65e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4599g00008 K01728 - gmx:100780437 623.239