Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4598g00004 ATGATGAATCAACATCCTACTGATGCTCATATGGCCCTCTTCTCTCACCTATGCCCGCCTGGTTCATACTCTCAAATCATCCCTCAACAAGGGGAAGCGAAGCGGAGACGACGTCGTAAGAAGGAGAAAAACCAAGCCGTGGGAACGAAGAAGAGGAAGCTCAGTGAGGAGCAAGTGAATCTTCTGGAGCTAAACTTTGGGAACGAACATAAATTAGAGTCGGAGAGGAAGGACAGGCTGGCATCGGAGCTTGGTCTTGATCCTCGTCAGGTGGCCGTGTGGTTTCAAAACAGAAGGGCTCGGTGGAAGAATCAGAAGCTGGAAGAAGCCTACTCCGACCTCAAGAAACTCCACGAAACCACCCTTCTCGAGAAAGGCCACCTCGAAGCTGAGGTATCGAAGCTAAAGGGGCTGCTTTCGGAAGCAGAGAAGGAGATCCAACGCCTGTTAGAGAGGGGGGAGAGATCAGTTCTGTCGAACGATGCTGCGAATAGCCCAAGCTCATCACAGACAATGGAAGCAGGGGGGGACCCACTATTTTTGGGGGAATTCGGAGTCGAAGGTTACGACGATGACGACGATGTGTTGCTGTACCCAACAGATCACTACCTGAATTGCATGGAATGGCTCAGTTCGTACATGTGA 645 0.5101 MMNQHPTDAHMALFSHLCPPGSYSQIIPQQGEAKRRRRRKKEKNQAVGTKKRKLSEEQVNLLELNFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNQKLEEAYSDLKKLHETTLLEKGHLEAEVSKLKGLLSEAEKEIQRLLERGERSVLSNDAANSPSSSQTMEAGGDPLFLGEFGVEGYDDDDDVLLYPTDHYLNCMEWLSSYM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4598g00004 214 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Pral4598g00004 214 Coils Coil 97 117 - -
Pral4598g00004 214 MobiDBLite consensus disorder prediction 33 47 - -
Pral4598g00004 214 MobiDBLite consensus disorder prediction 24 52 - -
Pral4598g00004 214 FunFam homeobox-leucine zipper protein ATHB-40 42 113 - -
Pral4598g00004 214 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Pral4598g00004 214 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Pral4598g00004 214 CDD homeodomain 50 106 IPR001356 GO:0003677
Pral4598g00004 214 SUPERFAMILY Homeodomain-like 50 113 IPR009057 -
Pral4598g00004 214 Gene3D - 46 113 - -
Pral4598g00004 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 162 IPR045224 GO:0003700
Pral4598g00004 214 Pfam Homeodomain 50 104 IPR001356 GO:0003677
Pral4598g00004 214 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Pral4598g00004 214 SMART HOX_1 48 109 IPR001356 GO:0003677
Pral4598g00004 214 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4598g00004 Pral-Chr4598 28909 30587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4598g00004 1 214 Homeobox Transcription Factor Family AT2G18550 50.000 1.20e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pral4598g00004 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4598g00004 K09338 - qsa:O6P43_024730 224.172