Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4597g00012 ATGGGAGAACTCAGTGACCAAGATAAGAAAATAGAGATGACAACCACTCCGATTTATGATGACGATCACCCCAAAAGGAATTCTTCAGAACACCATCATCTTTATTTTCCTCCTCCATCGAATCATCTACAAGGTGATCCATATCCAAGCTTGACGATCGTTAAGTACAGAGAATGTTTGAAGAACCACGCAGCGAGCATGGGGAGCCATGTTGTGGATGGATGTGGAGAGTTCATGCCAAGCGGAGAAGAAGACGCCACGGAATCTTTAAGATGTGCTGCTTGTGGATGCCACCGGAATTTTCATCGGAAAGAAACAGAAGTCCCTTCTTCTCTTCATCAGCAACATAACAGATTGATTCCACCAATGATGGTGGCCTTCGGAGGGGTGCCAGTGGAGTCCTCCGGCGAAGATCTCCATGTTCTGCGGCCTAATAGCGGAGGGCAGCTGGCAGTGCAGGCATCACTCTCGAAGACGAAGAGGTTTCGGACCAAGTTTACACAAGAACAGAAGAGGAGGATGATGGAATATGCTGAGAAGCTTGGGTGGAAGATCCAGAAAAATGATGAACAAGAAGTACGGCAATTCTGTTCTCAGGTTGGAGTGAACAGGCAGGTTTTCAAGGTTTGGATGCACAACAATAAGCAAAGGACGAAGCAGCAGCAAGTGTAA 672 0.4688 MGELSDQDKKIEMTTTPIYDDDHPKRNSSEHHHLYFPPPSNHLQGDPYPSLTIVKYRECLKNHAASMGSHVVDGCGEFMPSGEEDATESLRCAACGCHRNFHRKETEVPSSLHQQHNRLIPPMMVAFGGVPVESSGEDLHVLRPNSGGQLAVQASLSKTKRFRTKFTQEQKRRMMEYAEKLGWKIQKNDEQEVRQFCSQVGVNRQVFKVWMHNNKQRTKQQQV 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4597g00012 223 NCBIfam homeobox domain, ZF-HD class 160 216 IPR006455 -
Pral4597g00012 223 MobiDBLite consensus disorder prediction 1 42 - -
Pral4597g00012 223 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Pral4597g00012 223 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Pral4597g00012 223 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Pral4597g00012 223 FunFam Zinc-finger homeodomain protein 2 148 220 - -
Pral4597g00012 223 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 216 - -
Pral4597g00012 223 MobiDBLite consensus disorder prediction 1 32 - -
Pral4597g00012 223 ProSiteProfiles 'Homeobox' domain profile. 157 221 IPR001356 GO:0003677
Pral4597g00012 223 SUPERFAMILY Homeodomain-like 152 220 IPR009057 -
Pral4597g00012 223 Gene3D - 148 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4597g00012 Pral-Chr4597 54462 55760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4597g00012 54 223 ZF-HD Transcription Factor Family AT2G18350 51.913 1.52e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral4597g00012 ZF-HD_dimer 2.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4597g00012 - - pcin:129311881 364.385