Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4597g00011 ATGGGAGAACTCAGTGACCAAGATAAGAAAATAGAGATGACAACCACTCCGATTTATGATGACGATCACCCCAAAAGGAATTCTTCAGAACACCATCATCTTTATTTTCCTCCTCCATCGAATCATCTACAAGGTGATCCATATCCAAGCTTGACGATCGTTAAGTACAGAGAATGTTTGAAGAACCACGCAGCGAGCATGGGGAGCCATGTTGTGGATGGATGTGGAGAGTTCATGCCAAGCGGAGAAGAAGACGCCACGGAATCTTTAAGATGTGCTGCTTGTGGATGCCACCGGAATTTTCATCGGAAAGAAACAGAAGGTAAGCCAGAAGTACAACATATTTCTGATTATTACAGCTATTATTCCAACAAAAGCAACGATCAACGACATAGAATTGCTTCTCCTTTAGTCCCTTCTTCTCTTCATCAGCAACATAACAGATTGATTCCACCAATGATGGTGGCCTTCGGAGGGGTGCCAGTGGAGTCCTCCGGCGAAGATCTCCATGTTCTGCGGCCTAATAGCGGAGGGCAGCTGGCAGTGCAGGCATCACTCTCGAAGACGAAGAGGTTTCGGACCAAGTTTACACAAGAACAGAAGAGGAGGATGATGGAATATGCTGAGAAGCTTGGGTGGAAGATCCAGAAAAATGATGAACAAGAAGTACGGCAATTCTGTTCTCAGGTTGGAGTGAACAGGCAGGTTTTCAAGGTTTGGATGCACAACAATAAGCAAAGGACGAAGCAGCAGCAAGTGTAA 762 0.4541 MGELSDQDKKIEMTTTPIYDDDHPKRNSSEHHHLYFPPPSNHLQGDPYPSLTIVKYRECLKNHAASMGSHVVDGCGEFMPSGEEDATESLRCAACGCHRNFHRKETEGKPEVQHISDYYSYYSNKSNDQRHRIASPLVPSSLHQQHNRLIPPMMVAFGGVPVESSGEDLHVLRPNSGGQLAVQASLSKTKRFRTKFTQEQKRRMMEYAEKLGWKIQKNDEQEVRQFCSQVGVNRQVFKVWMHNNKQRTKQQQV 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4597g00011 253 FunFam Zinc-finger homeodomain protein 2 178 250 - -
Pral4597g00011 253 MobiDBLite consensus disorder prediction 1 42 - -
Pral4597g00011 253 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Pral4597g00011 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Pral4597g00011 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 33 246 - -
Pral4597g00011 253 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Pral4597g00011 253 SUPERFAMILY Homeodomain-like 182 250 IPR009057 -
Pral4597g00011 253 NCBIfam homeobox domain, ZF-HD class 190 246 IPR006455 -
Pral4597g00011 253 Gene3D - 178 250 - -
Pral4597g00011 253 MobiDBLite consensus disorder prediction 1 32 - -
Pral4597g00011 253 ProSiteProfiles 'Homeobox' domain profile. 187 251 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4597g00011 Pral-Chr4597 54462 73242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4597g00011 52 246 ZF-HD Transcription Factor Family AT2G02540 45.854 1.90e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pral4597g00011 ZF-HD_dimer 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4597g00011 - - pcin:129311881 426.402