Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4597g00008 ATGGGAACTGATCGTGGTGAAGTAGTGGAGCCACTACCAAATGTCCGCTCCTTTAAGGTCCATCGAAAAATGTGCATAGAGCTAATGAAATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGCTCATCAGGAATACAATCTCTGTGCTTGCTAAACAGTGCAGTTGACAAAGCCAAACTTCTCCTGCAGCATTGCTGCGAGTCTAGCAAACTCTACCTGGCGGTGACGGGAGATACTGTGCTCTCAAGATTCCTAAAGGCAAGAAAATCATTGGAGCAAAGCTTAGGTCAAGTTCAGAGCATTGTTCCAGTTATGTTGGCTGCGGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTACTGGATTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAATTACTTCAGCAAGGTGCTTCAACCGCAGACTCTGTTGAAAATTCTGAGATTAAAGCTCTTCAGTTTGCGGCCGCAAGACTTAATATCTCATCCCCGAAGGCCATCTTAATAGAGAAACGATCTATTAAGAAGTTGTTAGATAAAGTTGGGCCAAATGATCAGACAAAAAAGACGATCTTGAGATATCTCTTGTATCTGTTGAAGAAGTATGGAAAGTATATCACAGGAGAACAGATGGAAATGATCTATCCTTATAGTGAAGGATCGATTGTACCTGAGAACTGCAGTCATCATTCTCGACATATCCATAATATTGAATCAGAAAGATGCCTTAATCATGATCAGTATGAAACTCGCAACAGTGAGATGGGTAGAGTAGAACCGCCCGAGGAATACAAATGTCCAATATCTTCAAGATTAATGTATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATACATGTCCAAAAACCGAGAAGAGACTGGCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTGGTGCAGAAATAATGGAGTTATACTTGCTGAACCACAACAGCAAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAATTTCCATTAGGAGTTTTGGCAGTTCCATGGATGATCTGCACTTACCAGTAGATCTTAGCAACATGTCACTTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTCGGAACTCTAACGACTTAAATTTGATGTCGAAGAAGGTCAATGACAATTCTTGGAGTCATCAACTTAATGTGCATGTGCATGACACTGATCTGATAATTTTGTCTGAATCCCATGGCCTTGAATGGGATTCTCAATGCCAGGCCATTGAAGATCTGAAAGATCGTTTGAAATGCAATTGCCAAAGTTCTTGTTCTGTGTCTTCTGAACGTTTTATTGAATTTCTCAACAGATTTTTGAGCAGTGCATATGAACGTCAAGATGTGAAAGCTCTTAGAACTGGAACTCAGTTGTTAATGGAATTTGTGAATAACTGCGGAAAGGATCTATCTTATTTAAGAGAAGGTACATTTGGCATGTTGGGAAGTTTCCTTGATTTAGAAGTGATAGGTGAAGCTCTTTCTATAATGGAAAAACTATCTGCAAGTCAGCACAGCAAAGCTACAAGTGCAACGTCCAGTGTGCTCACTTCCATCTTAAAGATCCTGGACTCTGACAGCAGAGGGTTCCAAGAACAAGCTATCAGAATATTGTATAATTTGTCTTTCAACAGTGAAAATTGCTCCCCCATGGCATCTCTCGGGTGCATCCCAAAATTGCTGCCCTTTTTCAAGGACCAGGCCTTTTTGAGATTCTGTATATGTACACTGAAAAACCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGCGGGAACTAATGGATGCATATCATCAGTTGCTGAGATACTTGACACTGGTAGTGCTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTGTGCTCTCAACGTGAAGATTATTGTCAGGTGGTCATGTATGAGGGTGTTATCCCTTCCCTTGTCACTATCTCCATCAATGGAAGTGAGAATGGAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTCAATATGAAGAAGAGTCCATGAGACCAAGATGTGACACTCAAGATTCTAACTATCATTCTCAAGAAAAGAAATCGTCAAAGACCTCTGGATTGCTGAAGAAACTATCACCATTCTCAAAAAGCAAGAGATGA 2256 0.4087 MGTDRGEVVEPLPNVRSFKVHRKMCIELMKLVDRISRIFPDIEAARPRCSSGIQSLCLLNSAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFLKARKSLEQSLGQVQSIVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGASTADSVENSEIKALQFAAARLNISSPKAILIEKRSIKKLLDKVGPNDQTKKTILRYLLYLLKKYGKYITGEQMEMIYPYSEGSIVPENCSHHSRHIHNIESERCLNHDQYETRNSEMGRVEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDTCPKTEKRLAHMSLTPNTVMKDLISKWCRNNGVILAEPQQQAKEFHSWEVSSISIRSFGSSMDDLHLPVDLSNMSLGSLDYSQGSDSSHARNSNDLNLMSKKVNDNSWSHQLNVHVHDTDLIILSESHGLEWDSQCQAIEDLKDRLKCNCQSSCSVSSERFIEFLNRFLSSAYERQDVKALRTGTQLLMEFVNNCGKDLSYLREGTFGMLGSFLDLEVIGEALSIMEKLSASQHSKATSATSSVLTSILKILDSDSRGFQEQAIRILYNLSFNSENCSPMASLGCIPKLLPFFKDQAFLRFCICTLKNLCDIEVGRVSVAGTNGCISSVAEILDTGSAEEQEHALSVLLSLCSQREDYCQVVMYEGVIPSLVTISINGSENGKVSALELLRLLGDVQYEEESMRPRCDTQDSNYHSQEKKSSKTSGLLKKLSPFSKSKR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4597g00008 751 ProSiteProfiles U-box domain profile. 272 346 IPR003613 GO:0004842|GO:0016567
Pral4597g00008 751 Gene3D - 444 724 IPR011989 -
Pral4597g00008 751 FunFam RING-type E3 ubiquitin transferase 272 346 - -
Pral4597g00008 751 Pfam U-box domain 274 343 IPR003613 GO:0004842|GO:0016567
Pral4597g00008 751 Pfam Kinesin-associated protein (KAP) 493 656 - -
Pral4597g00008 751 PANTHER U BOX DOMAIN-CONTAINING 26 716 - -
Pral4597g00008 751 SUPERFAMILY ARM repeat 489 705 IPR016024 -
Pral4597g00008 751 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 347 IPR013083 -
Pral4597g00008 751 MobiDBLite consensus disorder prediction 713 751 - -
Pral4597g00008 751 SMART Ubox_2 276 339 IPR003613 GO:0004842|GO:0016567
Pral4597g00008 751 SUPERFAMILY RING/U-box 262 347 - -
Pral4597g00008 751 SMART arm_5 667 707 IPR000225 GO:0005515
Pral4597g00008 751 SMART arm_5 585 623 IPR000225 GO:0005515
Pral4597g00008 751 SMART arm_5 544 584 IPR000225 GO:0005515
Pral4597g00008 751 CDD RING-Ubox_PUB 274 326 IPR045210 -
Pral4597g00008 751 MobiDBLite consensus disorder prediction 713 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4597g00008 Pral-Chr4597 28223 33466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4597g00008 4 713 U-box Gene Family AT1G24330 33.700 5.97e-115 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4597g00008 - - gmx:100791627 844.343