Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4589g00070 ATGGCTCCCGGTTTTGTATTCGAAGCTCCCAGTGACGAAGAAATTGAGCGCTCTGATTCTGAAGGCGAGGAACAGGAACAAAGCCAAGAAGAGGAAGCAGAAGAGCAGAGTGATTCTGATAATGAAGATCACGTCGGAGAAGGAGAAGACGAAGAAGAACAAGAAGAAGAAAGACCACGAGTTTCAAATAAAAAATCTCAATCCGCATGGGACTTCTCGAAGTACACCGAATCAGTGGCGGAGGAACATGCCCGACGAAGCACAACCTCAGTGGATCAGAAAATTGCCAAAGCCATTAAAGAACGCTCCACTCCGCTCAGAAAGCCCGTCGAAGACGACCAGGAGAGCTCGGAGTCCGAATCCGACAAACAAGAGGATTATAGACCAGAAGAGGAAGAAGATGAAGGCGGCAATGCAGACGAGAGCAAGTCTTTCTTCGCGCCATCTGACGGTGCTTCTTTTCATGCTGATTCATTCATGGAACTTAATTTGTCGCGTCCTTTGCTCCGGGCTTGTGAGGCCCTAGGATATGTTAAACCGACACCAATTCAGGCAGCGTGTATACCACTTGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGTTCTGGGAAGACTGCTGCATTCTCACTGCCTACGCTGGAGAGGCTTCTATATCGTCCCAAACGTGTGCAGGCCATAAGAGTCCTCATTCTTACTCCAACCAGAGAATTGGCGGTCCAAGTTCACAGTATGATAGAGAAACTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTCGTTGGGGGTCTGTCTACAAAGGTTCAAGAGGCTGCCTTGAGATCCATGCCAGATATTGTTGTTGCTACTCCAGGACGCATGATAGATCATTTACGCAATTCCATGTCAGTGGATTTAGATGATCTTGCTGTTCTAATCCTTGATGAGGCAGATCGTCTGTTAGAGCTTGGTTTTAGTGCTGAAATTCATGAACTTGTCCGCTTGTGTCCAAAAAAAAGGCAGACCATGCTATTTTCAGCTACCATGACTGAGGAGGTTGATGAACTTATTAAACTTTCTCTAACAAAACCCTTGCGTCTTTCTGCTGACCCATCTGCAAAACGGCCAGCAACCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGCGAAGCAAATCAGGAAGGAGTTCTTCTTGCATTGTGTTGCAAAACTTTTACATCTAAAGTGATCATATTCAGTGGAACAAAACAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTTTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAGCGTCTTGAGGCTTTAGATCAGTTTAGGAAGGAGCAAGTCGACTTTTTGATTGCTACTGATGTGGCTGCTCGAGGCCTAGACATTATTGGTGTTCAAACTGTCATCAACTTTGCATGTCCACGAGATCTTACCAGTTATGTTCATCGAGTAGGACGTACTGCAAGAGCTGGCAGAGAAGGATATGCTGTCACTTTTGTGACTGACAATGACCGGTCACTTTTAAAAGCAATTGCAAAGAGGGTAGGTTCAAAGCTGAAGAGCCGTATTGTTGCAGAACAATCTGTAATTAAGTGGTCTCAAACTATTGAGCAAATGGAGGATGAAATTGCTTTAATTGTTGAAGAAGAGAGGGAGGAAAGAGCCCTAAGGAAGGCTGAAATGGAGGCGACAAAGGCTGAAAACATGATTGAACATAGGGAAGAGATATATTCCCGGCCCAAAAGAACATGGTTTATGACGGGGCAGGAGAAGAAGCTTGCTGCAAAAGCAGCCAAGAAGCCTAACGAAAAGGAAAAGAGCTCTGGGAAGGAAGTAATTAGTGCTGAACAAGCCGAAGCCCTAAGAATGAAGGAAAAGAGGAAGCGAGAGCGAGAAAAAAATTTGCCCAGGAAGAAGCGCAGAAAATTGGAAGCTGCTAGAGAGATGTTGGAGGATGAAGGTCATTTTGAGAAGCCAGAAGCTAATGAGAAAAATAAGAAAGAGAAGACTGGAATGTCACTTGTTGATGTGGCATACCGACGAGCAAAAGCAGTTAAAGCAGTGAAGAAGGCTATGGATGCTGGCAAAATTGTGAAGAAGGGTAAGAAGAAATCGAATAATTCTTCACGAAAGACTCCTTCAAGGACAGAGGAAATGCGGGAGCTTTTCCAAACTGACATGAGTGAGAAAAAACAAAAAAGAGTTGGTGGACCAGGGAAGAAATCCAAAAGTTCATTCAAGAGCAAGTCAAGGTATAAGCGCAGGTAG 2286 0.4462 MAPGFVFEAPSDEEIERSDSEGEEQEQSQEEEAEEQSDSDNEDHVGEGEDEEEQEEERPRVSNKKSQSAWDFSKYTESVAEEHARRSTTSVDQKIAKAIKERSTPLRKPVEDDQESSESESDKQEDYRPEEEEDEGGNADESKSFFAPSDGASFHADSFMELNLSRPLLRACEALGYVKPTPIQAACIPLALTGRDICGSAITGSGKTAAFSLPTLERLLYRPKRVQAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRLCPKKRQTMLFSATMTEEVDELIKLSLTKPLRLSADPSAKRPATLTEEVVRIRRMREANQEGVLLALCCKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALDQFRKEQVDFLIATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRVGSKLKSRIVAEQSVIKWSQTIEQMEDEIALIVEEEREERALRKAEMEATKAENMIEHREEIYSRPKRTWFMTGQEKKLAAKAAKKPNEKEKSSGKEVISAEQAEALRMKEKRKREREKNLPRKKRRKLEAAREMLEDEGHFEKPEANEKNKKEKTGMSLVDVAYRRAKAVKAVKKAMDAGKIVKKGKKKSNNSSRKTPSRTEEMRELFQTDMSEKKQKRVGGPGKKSKSSFKSKSRYKRR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4589g00070 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 517 IPR027417 -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 600 678 - -
Pral4589g00070 761 Coils Coil 619 641 - -
Pral4589g00070 761 Gene3D - 113 364 IPR027417 -
Pral4589g00070 761 CDD SF2_C_DEAD 393 506 - -
Pral4589g00070 761 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 308 316 IPR000629 -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 76 114 - -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 716 741 - -
Pral4589g00070 761 SMART helicmild6 412 497 IPR001650 -
Pral4589g00070 761 Pfam DEAD/DEAH box helicase 181 351 IPR011545 GO:0003676|GO:0005524
Pral4589g00070 761 MobiDBLite consensus disorder prediction 1 147 - -
Pral4589g00070 761 Coils Coil 542 582 - -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 115 138 - -
Pral4589g00070 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 362 IPR014001 -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 14 56 - -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 643 678 - -
Pral4589g00070 761 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Pral4589g00070 761 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 114 715 - -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 696 761 - -
Pral4589g00070 761 CDD DEADc_DDX27 168 363 - -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 600 636 - -
Pral4589g00070 761 MobiDBLite consensus disorder prediction 742 761 - -
Pral4589g00070 761 SMART ultradead3 176 377 IPR014001 -
Pral4589g00070 761 Gene3D - 373 572 IPR027417 -
Pral4589g00070 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 536 IPR001650 -
Pral4589g00070 761 Pfam Helicase conserved C-terminal domain 395 497 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4589g00070 Pral-Chr4589 524027 536737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4589g00070 145 514 Eukaryotic Initiation Factors Gene Family AT3G13920 33.780 4.03e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4589g00070 K13181 - gmx:100791233 1016.91