Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4589g00017 ATGGACGTTGCTGCAGATAACCTGCAAGCAGCAGCAGCAGAAGGAGGAGGAGGAGGATCATGTTCTTCTCAGAAGAAGAATGGAAGAGGGAAAATAGAGATAAAGAGGATAGAGAACACAACCAATAGGCAAGTGACTTTCTGTAAGAGACGTAATGGCTTACTCAAGAAGGCTTATGAATTGTCTGTTCTTTGCGATGCTGAAGTCGCCCTCGTCGTCTTCTCTAGCCGTGGTCGCCTGTACGAGTACGCCAATAACAGTGTTAGAGCAACTATTGAAAGGTACAAGAAAGCATGCGCTGCTTCCTCAAACACAGAATCTGTAGCTGAAGCTAACACCCAGTTCTATCAGCAAGAATCATCCAAGTTAAGAAGGCAGATACATGACATTCAGAATCTAAACAGGCACATTCTGGGTGAAGCTCTGAGCTCCTTGAGTCTTAAGGAGCTTAAAAACCTAGAGGGAAGACTAGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCACGAAACATTGTTTGCTGAAGTGGAGTTCATGCAAAAGCGGGAGATGGAGCTTCAAAACCACAACAATTATCTACGAGCAAAGATTGCAGAACAGGAGAGAGCACAGCAGCAGGAGCAGCAGCAATCAAGTGTGATGCAGCAGCAGCAACAGGGAAGTGTGTGTGAGTCCATCCCCACACAATCTTATGATCGCAACTTCTTCCCTGTAAATCTCTTGGCTTCTAATAATCATCATTATTCTTCTCGTCAAGATCACACTGCTCTCCAGCTTGTGTAA 783 0.4457 MDVAADNLQAAAAEGGGGGSCSSQKKNGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATIERYKKACAASSNTESVAEANTQFYQQESSKLRRQIHDIQNLNRHILGEALSSLSLKELKNLEGRLEKGLSRVRSRKHETLFAEVEFMQKREMELQNHNNYLRAKIAEQERAQQQEQQQSSVMQQQQQGSVCESIPTQSYDRNFFPVNLLASNNHHYSSRQDHTALQLV 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4589g00017 260 Coils Coil 190 210 - -
Pral4589g00017 260 ProSitePatterns MADS-box domain signature. 29 83 IPR002100 GO:0003677|GO:0046983
Pral4589g00017 260 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Pral4589g00017 260 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Pral4589g00017 260 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Pral4589g00017 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 29 211 - -
Pral4589g00017 260 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
Pral4589g00017 260 Pfam K-box region 111 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4589g00017 260 FunFam agamous-like MADS-box protein AGL11 39 122 - -
Pral4589g00017 260 CDD MADS_MEF2_like 28 104 IPR033896 GO:0000977|GO:0045944
Pral4589g00017 260 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4589g00017 260 SUPERFAMILY SRF-like 28 103 IPR036879 GO:0003677|GO:0046983
Pral4589g00017 260 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Pral4589g00017 260 Gene3D - 39 108 IPR036879 GO:0003677|GO:0046983
Pral4589g00017 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4589g00017 Pral-Chr4589 166973 172495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4589g00017 14 260 MADS-box Gene Family AT3G58780 69.880 9.31e-118 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4589g00017 K-box 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4589g00017 K09264 - gmx:100817239 375.941