Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4580g00012 ATGGCTCCAAATCATGGTATGGATTTCTCATCCTCTGAAGCCTCCAGCATCTCAGGAGGGTCCAAAGGAGAAAGTTCCAGAGATGAAGCCATCAGGAACCAGAAGATGAAGATGGTTCAAATTACCAGCAGCAAGGATGATTCTCTTCGTAATAAATCGAAGATGGAGCTGGATTTTTTCAGATCAGAAGTGAACATCATAGGTTCTTCATCTGAAACAAATAATAAAAACAACAATGGAAAAGATCATGAGTATGATTATCTTGAAGATCATCATGGTGATGATAATGAAAAGAACAGTTCTGCAGAAAGGACTTACTGCTGCAACTTCTGCAAAAGAGAGTTTTCTTCCTCACAAGCCCTAGGAGGCCATCAAAACGCACACAAACAAGAGCGTGCAATTGCAAAACGACGACAAGCAGGGATTGTTTCTGATCACCATTTTGGTTTCTTGGGGAATCATTATTATTCTCCACACTATTCTTATTATGGTAATTACCCTTATCATCATCCTAACCCTCTGGTTAATAGCCCTTTGATCAATTATAATAGGCCACTTGGGGTTAGAATGGAGTCCATGATTCACAAACCTTCTTACAGTAACCCTAATTTTAGGTTCAGGCATGATCATCAAACCCTAGATAGGTTTGGAGTTAGGGCAAGTTCTGGAACCTTGAAGATTGAAGAAATTAGTGAGAATATTAGTCCTCCAACTACTCGCCATCAGTTTGGGCAAAATTCTTCTTCTTCAACTACTGCTACTATTACTGTTGCTACTGGTGGTGATCAACACATCAAGTTTATGCCAGAAGAAGCTCCCAAGAAAGAGAATGATGATTATCTTGATTCTTCGGGTCTTGATTTGTCTCTTAAGCTTTAA 879 0.3936 MAPNHGMDFSSSEASSISGGSKGESSRDEAIRNQKMKMVQITSSKDDSLRNKSKMELDFFRSEVNIIGSSSETNNKNNNGKDHEYDYLEDHHGDDNEKNSSAERTYCCNFCKREFSSSQALGGHQNAHKQERAIAKRRQAGIVSDHHFGFLGNHYYSPHYSYYGNYPYHHPNPLVNSPLINYNRPLGVRMESMIHKPSYSNPNFRFRHDHQTLDRFGVRASSGTLKIEEISENISPPTTRHQFGQNSSSSTTATITVATGGDQHIKFMPEEAPKKENDDYLDSSGLDLSLKL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4580g00012 292 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
Pral4580g00012 292 ProSitePatterns Zinc finger C2H2 type domain signature. 107 128 IPR013087 -
Pral4580g00012 292 MobiDBLite consensus disorder prediction 1 49 - -
Pral4580g00012 292 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 10 292 IPR044246 GO:0009788
Pral4580g00012 292 MobiDBLite consensus disorder prediction 69 99 - -
Pral4580g00012 292 Gene3D Classic Zinc Finger 77 148 - -
Pral4580g00012 292 Pfam C2H2-type zinc finger 106 130 - -
Pral4580g00012 292 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Pral4580g00012 292 MobiDBLite consensus disorder prediction 270 292 - -
Pral4580g00012 292 MobiDBLite consensus disorder prediction 8 23 - -
Pral4580g00012 292 MobiDBLite consensus disorder prediction 77 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4580g00012 Pral-Chr4580 102678 104015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4580g00012 79 292 C2H2 Transcription Factor Family AT5G01860 33.953 3.66e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4580g00012 - - pcin:129316645 296.204