Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4579g00029 ATGATTGTGAGCGAGAAGATGGTGACCAAAGAAATTGTCTGTCAGCAAAGCATTCCCGTGTTAGATGTGGAGTATCATCTTCGCGTAGCACAAGAGCACAACGTCAAGGTGGAGGTTTCGCCGAGATCTTCTTCTGTTCCGATCTTTGGCCAAGTTCGGGTTTCTTCTGAATCAATTTCTACTGAAACGCGCCGCTTCGAAACGGCTGAGAGTTGTCCTGAGATAATTAATGATTCCGTTATAGAGATCTCTTCATCTAAGTTCATCCCAAACGTCCGATCTGGTAGCCATTCTGATATTGGACGACGGCGATATATGGAAGATGAACACATTCAAATAGATGATCTCGCTTCCCATCTTGGACTTGTGTTCAAGTCTCCAATACCGTGTGCATTTTATGCAGTTTTTGACGGCCATGGAGGACCTGATGCGGCCGATTTTGTTAAGAGGAATGCTATGAGACTATTTTTTGAAGATGCTAATCTGCTGCTGTCATATGATGGTAATACATTATTTCTGAAGAAATTGGAGGATTCCCATCGGAAAGCTTTCTTACTTGCAGATCTTGCCTTGGCTAATGAAGCAACTGTTAGGAATTCCTGTGGGACAACAGCATTGACCGCGCTTATACTTGGAAGTCATTTACTGGTTGCAAATGCTGGGGATTGTCGGGCAGTTCTTTGCAGAAAAGGAGTGGCTGTTGACTTGTCTCAAGATCATAGAGCAAGTTATTTACCAGAAAAGAGAAGGGTGGAAGAGTTAGGTGGCTCCATTGATGATGATGGCTATCTCAATGGTGATCTGTCTGTGACCCGAGCCCTTGGGGATTGGGGTTTAAAATTGCCACTTGGTTCTACTTCACCTCTTATTGCTGATCCAGATGTTCTACAGGTTTCATTGACTGAGGATGATGAGTTTTTGATCATTGGGTGTGATGGGATTTGGGATGTGATGTCAAGTCAGTATGCGGTTAGTTTTGTTCGCCGCGGGTTAAGAAGACATGATGATCCACAGCAATGTGCTAGAGATCTAGTCAAGGAAGCACTGCACTTGAGGACATCAGATAATCTCACTGTGATTGTTATATGTTTGTCTTCCGTTGGAAGCATAGTTGAATCATTTCCACCCCAGAGGCGAAGATTCAGAGCTTGTTCTCTTGCTGTTTCAGAGGGGGCTAGAGAAAAAGCAGCCAGCAGTTTTGCAAGGATAGATGACGACTGTGATCGGTTTAGAACCATTTAA 1242 0.4388 MIVSEKMVTKEIVCQQSIPVLDVEYHLRVAQEHNVKVEVSPRSSSVPIFGQVRVSSESISTETRRFETAESCPEIINDSVIEISSSKFIPNVRSGSHSDIGRRRYMEDEHIQIDDLASHLGLVFKSPIPCAFYAVFDGHGGPDAADFVKRNAMRLFFEDANLLLSYDGNTLFLKKLEDSHRKAFLLADLALANEATVRNSCGTTALTALILGSHLLVANAGDCRAVLCRKGVAVDLSQDHRASYLPEKRRVEELGGSIDDDGYLNGDLSVTRALGDWGLKLPLGSTSPLIADPDVLQVSLTEDDEFLIIGCDGIWDVMSSQYAVSFVRRGLRRHDDPQQCARDLVKEALHLRTSDNLTVIVICLSSVGSIVESFPPQRRRFRACSLAVSEGAREKAASSFARIDDDCDRFRTI 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4579g00029 413 Gene3D - 80 368 IPR036457 -
Pral4579g00029 413 ProSiteProfiles PPM-type phosphatase domain profile. 93 364 IPR001932 -
Pral4579g00029 413 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Pral4579g00029 413 FunFam Probable protein phosphatase 2C 22 78 367 - -
Pral4579g00029 413 PANTHER PROTEIN PHOSPHATASE 2C 74 362 IPR015655 GO:0004722|GO:0006470
Pral4579g00029 413 SMART PP2C_SIG_2 108 364 IPR001932 -
Pral4579g00029 413 SMART PP2C_4 83 362 IPR001932 -
Pral4579g00029 413 Pfam Protein phosphatase 2C 95 356 IPR001932 -
Pral4579g00029 413 CDD PP2Cc 92 364 IPR001932 -
Pral4579g00029 413 SUPERFAMILY PP2C-like 84 366 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4579g00029 Pral-Chr4579 167647 169979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4579g00029 1 401 PP2C-type Phosphatase Gene Family AT1G48040 55.257 9.28e-140 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Pral4579g00029 PP2C 2.2e-63 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4579g00029 K14803 - gmx:100798957 583.178