Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4579g00012 ATGGCAACAGCTGAGGCAGCTTCTGCTGCTCTTGGTCCCCGATATGCACCTGATGACCCCACTCTTCCAAAACCTTGGAAGGGACTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACGTTACCCAGTATGAAAAGCCTACTGCTCTGCCACCACCTTTGCCTGCTGGGCCACCTGCTGCTGTTTCTACACCCAAGCTGGCTCCTATCCCAGTGGCTCATTCAGTGCAACCTGGTGGGGTGGTGGCACAACATGGACAGCAGTTACTGCAAACGTCTCACCAACAGGGACAGCAAATGAGCCACCTATCCCAACAACATAGTCCTCAGGTAGCACAGGTTGCTCAGCAGCAGCCTTCTCAGGCAGCACAATCTGGACAACAACAGAGTTCCCAGCCACTGCAGTCTATGCCGCAACCAGGTTTGCAACAAGTCAGGCAGCAGCAGATGTTGCAGCCTCTAAGTCAGCAAATTCCGCCACAGCAAATGCATCATCAGATGCCTCAACAAGCCATCCAGTCACAACCTTTTGGGCAAGGAGCCACCCAGGATCATGGTTCATATATGGGACAGCCACAAGGTCATCAATTCAGTCACCAGAACGTACATTACATGCCCTATGCACAAAGCATGCACTCAAATGGGCAGCAAAGTTCCCAACCAATCCAGCATAACGTGCACGGTCAGCCATTGGAAAATCAACAGGAGTATAAAGCAGCATTTCCCAAGATAGAGGATGTAGATTTTAAAAATGGAAGTCAAGTTGGACTTTCACCATCTCAATATCAACAAAAGAGTGCCTTGCCCCTGCAAAGCAATCAGAACATTCCTGCTGGAATTTCCTCTGTCCAGATGCCACGTGTTGGTGTTAATGCTAGCCAATCACAACCATTCGGTGCTATGCCTGGGAGTATGCAACAACCCTCTGCAGCAATGCAATCACAGCAGGGTAGTGCTGATTTAGTTTATCAACATGGTCATAGCTTTCAAAACCAGATGCCCCCAGGAATGATGCATGGTCAACCATCTAATGTTCATCCTGGTGACCTAAAGATGGGACATGAGGATAACTTGCGTGGTAGAGCTGTGAATGAATATTACTACAACTCTGGCAAGGAGATGCCATCAATGGGTTCTCAGCAGCCAAATATTGCGCCAATACCCATTTCCAGAAATCAGCAGGCTTATCAGCAGGATATGAGGATTGGCAGTTCCCCTTTCCAAAATGCAATGCCTGGTGGGAATGGGTTAAATGGCGTCCCAGGGCATAATATGCATAACATGTTTAATCCTCCGATTGGAGGACCTCCACCAGTCGCTAGCAACTCTTTGACAAGGCCTCATGTCACTGATCTGTCACCTGCTGAAGTTTACTGTCAGCAACATGAAGTTACAGCCATGGGCGACAATGTTCCTCCCCCCTTCATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTGAGAGAGATCTATTCTGCTGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACATTGGGTTATTTAATACCAGCATTTATGATTCTTAGACAGAGGCGTAACAATTCCCTGAATGGACCCACAGTGTTGGTATTGGCTCCTACACGTGAACTTGCAACACAGATTCAAGATGAGGCCATAAAATTTGGCCGATCATCACGGGTCTCCTGCACGTGCTTGTACGGTGGGGCACCAAAAGCTCTTCAGCTAAAGGAGTTAGATCGCGGAGCAGACATTGTTGTTGCTACACCTGGCCGGCTCAATGACATACTTGAAATGAAGAAAATCGACTTTGGGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATCGTGAATGAGATACCACCACGTAGGCAAACTGTTATGTACACAGCAACATGGCCAAAAGAAGTACGAAAAATTGCTGGTGATCTCCTTGTTAATCCTGTCCAAGTTAATATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGAGCCCAAGAACGAGGTTCCAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAACTTGCACGTAGCATTGGCCGTACTTTTGGTGCTGCTGCAATCCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGGAAGTCACCGGTTCTAGTTGCCACTGATGTTGCTGCCCGGGGGCTGGACATTAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTGCACCGTATTGGTCGTACAGGAAGGGCTGGAGCCACTGGAGTGTCATACACCTTTATCTCCGAGCAGGACTGGAAACATGCAGGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTACGGCAGATGGCTCTGCGTGGGCCATCTAACTTTGGAAAGGATCGTGGTGGAATGAGCCGTTTTGACTCTAGTGGTGGCCGTTGGGAGTCTGGTGGCCGTGGTGGCATGAGAGATGGTGGTGGGTTTGGTGGTCGAGGTGGCATGAGAGATGGTGGTGGGTTTGGTGGTCGAGGTGGCATGAGAGATGGGGGTGGGTTTGGTGGTCGTGGTGGCATGAGGGATGGTCCAGGTGCGCAGGGTGGAAGAGGTGATTTCTTTCCTGGTAGGGGCAACAGGGGTCGGGGAATGGGTGGCCCTCGAGGTGGTCAGGTTGGCTGGGGTAGGGGTGAACGTAATTCTCATGATCGTTACAACATGGACGGGCGAGGACGTGGGCGTGGGCGTGGGCGTGGGCGTTTCGACGACAGAAGGGATGTTGGTTACAGGAATAGAGGCAGAAGTTACAGTCGCAGCCCTGAAAGGGTTCGAACATGGGATTATAGCAGAAGTCGCAGTAGAAGCAGAAGCAGAAGTAGAACCCAAAGCAGGAGCAGGAGCTGGAGTAGGGGACGCAGTCGAAGTCGCAGCTGGTCTCGTGGCCGGAGTCGCAGTTACAGCCGTAGCAACAGCCGGAGTTGGAGTCCCAGTCGGAGCCATGGCCGCAGGAGTCAAAGTTACAGCCGCAGCCGTAGTAGAAGCCGCAGCCATGATAGACGTGATAGGCCAGATCAACATGTTTCTGATCAGAATGAGCATAGAGCACAAGAAGCAGAAGCTTCTGAACCAAGAACGTTCTCCATGTCTCCTGGTACCCGGGAGAACTCACTTCTGGGAAGTGAACACGTGGAACAGCTACCTGTTGCTGGTAGTGTTGGGACAGTTAATTCAGGGGCTGCAGTAGACCCTTGCCTTCAATCAGTTCCTAATGTCTAG 3477 0.495 MATAEAASAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPTALPPPLPAGPPAAVSTPKLAPIPVAHSVQPGGVVAQHGQQLLQTSHQQGQQMSHLSQQHSPQVAQVAQQQPSQAAQSGQQQSSQPLQSMPQPGLQQVRQQQMLQPLSQQIPPQQMHHQMPQQAIQSQPFGQGATQDHGSYMGQPQGHQFSHQNVHYMPYAQSMHSNGQQSSQPIQHNVHGQPLENQQEYKAAFPKIEDVDFKNGSQVGLSPSQYQQKSALPLQSNQNIPAGISSVQMPRVGVNASQSQPFGAMPGSMQQPSAAMQSQQGSADLVYQHGHSFQNQMPPGMMHGQPSNVHPGDLKMGHEDNLRGRAVNEYYYNSGKEMPSMGSQQPNIAPIPISRNQQAYQQDMRIGSSPFQNAMPGGNGLNGVPGHNMHNMFNPPIGGPPPVASNSLTRPHVTDLSPAEVYCQQHEVTAMGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFMILRQRRNNSLNGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTVMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRAQERGSKVIIFCSTKRLCDQLARSIGRTFGAAAIHGDKSQGERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKDRGGMSRFDSSGGRWESGGRGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGPGAQGGRGDFFPGRGNRGRGMGGPRGGQVGWGRGERNSHDRYNMDGRGRGRGRGRGRFDDRRDVGYRNRGRSYSRSPERVRTWDYSRSRSRSRSRSRTQSRSRSWSRGRSRSRSWSRGRSRSYSRSNSRSWSPSRSHGRRSQSYSRSRSRSRSHDRRDRPDQHVSDQNEHRAQEAEASEPRTFSMSPGTRENSLLGSEHVEQLPVAGSVGTVNSGAAVDPCLQSVPNV 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 1022 1048 - -
Pral4579g00012 1158 Gene3D - 16 54 - -
Pral4579g00012 1158 SMART ww_5 21 54 IPR001202 GO:0005515
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 860 1131 - -
Pral4579g00012 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 552 835 IPR027417 -
Pral4579g00012 1158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 859 IPR001650 -
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 1109 1126 - -
Pral4579g00012 1158 FunFam ATP-dependent RNA helicase RhlB 690 862 - -
Pral4579g00012 1158 Pfam DEAD/DEAH box helicase 505 675 IPR011545 GO:0003676|GO:0005524
Pral4579g00012 1158 SMART ultradead3 500 703 IPR014001 -
Pral4579g00012 1158 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 481 509 IPR014014 GO:0003724
Pral4579g00012 1158 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 451 859 - -
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 1049 1070 - -
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 94 201 - -
Pral4579g00012 1158 CDD WW 23 51 IPR001202 GO:0005515
Pral4579g00012 1158 SMART helicmild6 736 820 IPR001650 -
Pral4579g00012 1158 CDD DEADc 492 686 - -
Pral4579g00012 1158 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 632 640 IPR000629 -
Pral4579g00012 1158 Gene3D - 457 690 IPR027417 -
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 1 27 - -
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 964 1021 - -
Pral4579g00012 1158 FunFam probable ATP-dependent RNA helicase DDX17 448 689 - -
Pral4579g00012 1158 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Pral4579g00012 1158 Pfam Helicase conserved C-terminal domain 712 820 IPR001650 -
Pral4579g00012 1158 MobiDBLite consensus disorder prediction 1078 1107 - -
Pral4579g00012 1158 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Pral4579g00012 1158 Gene3D - 691 861 IPR027417 -
Pral4579g00012 1158 Pfam WW domain 22 52 IPR001202 GO:0005515
Pral4579g00012 1158 CDD SF2_C_DEAD 700 829 - -
Pral4579g00012 1158 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 686 IPR014001 -
Pral4579g00012 1158 SUPERFAMILY WW domain 13 54 IPR036020 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4579g00012 Pral-Chr4579 65214 71689 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4579g00012 479 858 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 5.72e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4579g00012 K12823 - gmx:100807830 1127.08