Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4577g00001 ATGACAAGAGAGACAGGTTCAGCAAATAATCCTGTAGGTGGAAGTCCTGAAGAAGCTCAGGGAGTCTCAGACAAGCATCAGGATTCAAAGAAGATTAAGGAAAAAGATGAAACCACCAACACTGTAACCTTTTACAAGCTCTTCTCATTTGCAGATTCTTTGGATTATCTGTTGATGCTTGTGGGGACAGTTGGTGCTGTTGTAAATGGAATATCCATGCCCTTAATGACTGTTTTTATTGGAGATATAATTGATGCTTTTGGAAGATCCGCAGACACCAAAGAAGTTGTCCATGAAGTTTCCAAGGTGTCTCTGAAGTTCGTATACTTGGCAGTTGGTGCCTTTCTTGTGTCATTTCTTCAGGTGACTTGCTGGATGGTCACTGGAGAAAGACAGGCTGCAAGAATTAGAGGTTTATACCTGAAGACAATTTTGAGGCAGGACATCAGTTTCTTTGATAAGGAAACTAACACTGGTGAGGTTGTTGGAAGGATGTCAGGTGATACTGTTCTTATTCAAGATGCCATGGGAGAGAAGGTAGGACAATTCATACAGTGTGTGGCAGCTTTTTTTGGAGGTTTTATCATAGCATTCATTGAGGGATGGCTTCTAACTATTGTCATGCTATCCTCTATTCCTCCTATTGTCTTTTCTGGTGCTATGATGAGCATTGTTCTTGCCAAAGCCACATCCCGTGGACAAAAAGCTTATTCTGCTGCTGCAACTATAGCAGACCAGGCAATTGGTTCTATAAGAACAGTTGCATCATTCACAGGGGAGAAGCAAGCTATAGCTAAATATGATCAGTCCTTGATTAAAGCGTACAGGACTAGTGTGCAAGAGGGACTGGCTTCTGGTATGGGTTTTGGTTCAACTTTTCTTCTTTTTTTCTTCACTTATGGTTTGGCAGTATGGTATGGTGGGAAAATGGTACTGGAGAAAGGATATACAGGAGGGAAGGTTATCACCGTAATTTTTGCAGTTTTGACAGGCTCCTTGTCTCTGGGGCAGGCATCTCCAAGCTTGAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTCTAAGATGTTTGAAACAATTAAAAGGAAGTCAGACATTGATGCTTATGACATTACTGGCAAGCAGCTAGATGACATACGTGGGGATATAGAACTGAGGGAAGTTTGCTTTAGTTATCCTGCGAGGCCAGATGAACTCATATTCAATAGATTTTCTCTCTCAATACCAAGTGGCGCTACAACAGCTTTGGTTGGACAAAGTGGGAGTGGAAAATCAACAGTTATTAGTCTGATAGAAAGATTTTATGATCCACAAGCTGGTGAAGTTCTTATTGATGGTATCAATATCAAAGAATTGCAGCTAAAATGGACTAGACAGAAAATAGGCCTCGTCAGCCAGGAACCAGTTTTGTTTACTTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGGCGCGACAGATGCAGAAATCAGAGCTGCGGCAGAGCTTGCTTATGCTGCAAAGTTCATAGATAAACTTCCTCAGGGGTTAGACACAATGGTTGGCGAACACGGAACTCAGCTGTCTGGAGGTCAAAAGCAGAGGGTAGCCATAGCAAGAGCAATATTGAAAGACCCAAGAATTCTTCTTCTTGATGAAGCAACAAGCGCCCTTGATGCTGAATCTGAGAGAATCGTACAGGAGGCACTGGACAGAATAATGAAAAGTAGAACCACTGTTATTGTAGCTCATCGCTTGAGCACTGTAAGGAATGCTGATATTATTGCCGTTATTCAGCAAGGAAAAATAGTAGACAAAGGTTCACATGCTGAGCTCACAAAGAACCCTGATGGAGCCTATAGCCAACTCGTTAGATTGCAGGAAACAAAGGAGTCAGAGAATATGAATGCAAATGACACATATAAGCCAGAAAGCATATTGAATTCTGAAAGGCAATCAAGCCAACGACTTTCTTCCTTAAAATCTATAAGTCGAGAGTCATCTGGACTAGGGAGAAGCAGTCGTCATTCATTCTCAGTGCCATATGGTGTGCCTCCAACAAATGGACTCTTTGAAACAGCAGGTGCGGAACCTGAAGCTCCTAGTTCAAAAGATTCACCAACTCCTCCAGAAGTGCCACTTTACCGCCTGGCTTATCTAAACAAACCTGAGATTCCAGTCTTGTTTATAGGGACTCTAGTTGCTGTGGCAAATGCAGCAATATTCCCAGCTTTCGGGTTACTGCTCTCCAAAATGATAAACACTTTCTATGAACCTGCAGATAAACTCAGTAAAGATTCAAAGTTTTGGGCGTTGATATTTGTTGCCCTTGGTGTGGCATCCTTCTTAGTAATTCCAGCGAAGTTCTACTTATTTGCTGTCGCTGGTGGTAAGTTGATAAGAAGGATCCGGTTAATGTGTTTTGAGAAAATAATCCACATGGAAGTAAGTTGGTTTGATGAAGCTGAGCATTCAAGTGGAGTCCTTGGAGCCAGGCTATCTACTGATGCAGCTTCTGTCCGAGCTTTGGTTGGAGATGCACTTCTTTTGCTGGTTCAAAATATTGCTACTGCAATTATTGGCTTGGTCATTGCTTTGGAGGCATGCTGGCAGCTTGCTCTTATAATTCTTGTTATGCTACCCATATTAGTACTCAATGGATACGCACAGTTCAAGTTCATAGAAGGATTCAGCGCAGATGCTAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCGAATGATGCAGTAGGGAGTATTAGAACAGTTGCTTCTTTCTGTGCTGAGGAGAAGGTGATGGAATTATACCATAAAAGATGTGAAGGGCCAATTAAAACAGGCATAAGGAGAGGGATAATAAGTGGAGCTGGATTTGGTTTATCATTCTTCTTGCTGTTTTCTGTCTATGCATGCAGTTTCTACGCTGGAGCTCGACTTGTACAAGACGGCAAATCATCATTCTCAGATGTTTTTCGTGTCTTCTTTGCTCTCACTGTAGCAGCATTAGGAATCTCCCAATTTAGCTCCTTGGCTCCTGATTCAAGTAAAGCTAAGAGTTCCGTTGGTTCTATATTTACTATTCTTGATGGGAAATCAAAAATAGATCCCAGTGATGACTCCGGGATGACATTGGAACGGTTAATGGGAGAAATTGAGTTTCGCCATATCAGTTTCAAATATCCAACCAGATCTGATTTTCAAGTATTCAGAGATCTTTCCTTGAGCATTCGTTCAGGAAAGACAGTTGCTATAGTTGGAGAAAGTGGAAGTGGGAAATCAACTGTGATCTCGTTGTTGCAGAGATTTTATGATCCTGATTCAGGTCACATTACACTGGATGGAATAGAAATCCAAAAGCTACAAGTAAAATGGTTAAGACAGCAAATGGGTTTGGTGAGTCAAGAGCCTATGTTATTTAATGATACAATTAGAGCCAATATCGCATATGGAAAGGGAGGGGATGCAACAGAGGCTGAAATTATTGCTGCAGCAGAACTGGCAAATGCTCACAAGTTCATTTCTAGTTTGCAGCAGGGGTATGACACAATAGTAGGAGAGCGAGGAGTTCAGTTATCTGGGGGACAAAAGCAGCGCGTGGCTATTGCACGAGCCATAGTAAAGAATCCGAAAATATTGCTTCTGGATGAAGCTACCAGTGCCTTAGATGCAGAATCTGAGAAAGTGGTACAGGACGCGTTGGATCAAATTATGGTGGAAAGAACCACAGTAGTAGTGGCTCATAGATTATCCACAGTTAAAAGTGCAGATTTGATTGCAGTAATTAAAAATGGAGTCATAGAAGAGAAGGGAAAGCATGAGAATTTGCTCAACAAAGGTGGTGCCTATGCTTCCTTAGTGGCATTGCACACAGGTTCTTCCATAAAAGAACTCAACTGA 3873 0.4185 MTRETGSANNPVGGSPEEAQGVSDKHQDSKKIKEKDETTNTVTFYKLFSFADSLDYLLMLVGTVGAVVNGISMPLMTVFIGDIIDAFGRSADTKEVVHEVSKVSLKFVYLAVGAFLVSFLQVTCWMVTGERQAARIRGLYLKTILRQDISFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGQFIQCVAAFFGGFIIAFIEGWLLTIVMLSSIPPIVFSGAMMSIVLAKATSRGQKAYSAAATIADQAIGSIRTVASFTGEKQAIAKYDQSLIKAYRTSVQEGLASGMGFGSTFLLFFFTYGLAVWYGGKMVLEKGYTGGKVITVIFAVLTGSLSLGQASPSLSAFAAGQAAASKMFETIKRKSDIDAYDITGKQLDDIRGDIELREVCFSYPARPDELIFNRFSLSIPSGATTALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINIKELQLKWTRQKIGLVSQEPVLFTCSIKENIAYGKDGATDAEIRAAAELAYAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMKSRTTVIVAHRLSTVRNADIIAVIQQGKIVDKGSHAELTKNPDGAYSQLVRLQETKESENMNANDTYKPESILNSERQSSQRLSSLKSISRESSGLGRSSRHSFSVPYGVPPTNGLFETAGAEPEAPSSKDSPTPPEVPLYRLAYLNKPEIPVLFIGTLVAVANAAIFPAFGLLLSKMINTFYEPADKLSKDSKFWALIFVALGVASFLVIPAKFYLFAVAGGKLIRRIRLMCFEKIIHMEVSWFDEAEHSSGVLGARLSTDAASVRALVGDALLLLVQNIATAIIGLVIALEACWQLALIILVMLPILVLNGYAQFKFIEGFSADAKKLYEEASQVANDAVGSIRTVASFCAEEKVMELYHKRCEGPIKTGIRRGIISGAGFGLSFFLLFSVYACSFYAGARLVQDGKSSFSDVFRVFFALTVAALGISQFSSLAPDSSKAKSSVGSIFTILDGKSKIDPSDDSGMTLERLMGEIEFRHISFKYPTRSDFQVFRDLSLSIRSGKTVAIVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQKLQVKWLRQQMGLVSQEPMLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTIVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDQIMVERTTVVVAHRLSTVKSADLIAVIKNGVIEEKGKHENLLNKGGAYASLVALHTGSSIKELN 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4577g00001 1290 Gene3D ABC transporter type 1, transmembrane domain 105 1017 IPR036640 GO:0005524|GO:0016020
Pral4577g00001 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 722 1008 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4577g00001 1290 MobiDBLite consensus disorder prediction 1 34 - -
Pral4577g00001 1290 Gene3D - 380 633 IPR027417 -
Pral4577g00001 1290 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Pral4577g00001 1290 PANTHER ABC TRANSPORTER B FAMILY 20 623 IPR039421 -
Pral4577g00001 1290 FunFam ABC transporter B family member 1 1033 1282 - -
Pral4577g00001 1290 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 343 - -
Pral4577g00001 1290 Pfam ABC transporter transmembrane region 721 993 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4577g00001 1290 Pfam ABC transporter transmembrane region 59 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4577g00001 1290 MobiDBLite consensus disorder prediction 622 671 - -
Pral4577g00001 1290 Pfam ABC transporter 1062 1211 IPR003439 GO:0005524
Pral4577g00001 1290 ProSitePatterns ABC transporters family signature. 1183 1197 IPR017871 GO:0005524|GO:0016887
Pral4577g00001 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1032 1280 IPR027417 -
Pral4577g00001 1290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 620 IPR027417 -
Pral4577g00001 1290 SUPERFAMILY ABC transporter transmembrane region 709 1023 IPR036640 GO:0005524|GO:0016020
Pral4577g00001 1290 SMART AAA_5 1070 1264 IPR003593 GO:0016887
Pral4577g00001 1290 SMART AAA_5 409 601 IPR003593 GO:0016887
Pral4577g00001 1290 FunFam ABC transporter B family member 1 701 1009 - -
Pral4577g00001 1290 Gene3D - 1033 1287 IPR027417 -
Pral4577g00001 1290 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4577g00001 1290 MobiDBLite consensus disorder prediction 683 702 - -
Pral4577g00001 1290 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524|GO:0016887
Pral4577g00001 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1043 1280 IPR003439 GO:0005524
Pral4577g00001 1290 SUPERFAMILY ABC transporter transmembrane region 46 364 IPR036640 GO:0005524|GO:0016020
Pral4577g00001 1290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Pral4577g00001 1290 MobiDBLite consensus disorder prediction 1 16 - -
Pral4577g00001 1290 MobiDBLite consensus disorder prediction 622 668 - -
Pral4577g00001 1290 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Pral4577g00001 1290 CDD ABC_MTABC3_MDL1_MDL2 1043 1278 - -
Pral4577g00001 1290 FunFam ABC transporter B family member 1 372 621 - -
Pral4577g00001 1290 CDD ABC_6TM_Pgp_ABCB1_D2_like 711 1026 - -
Pral4577g00001 1290 FunFam ABC transporter B family member 9 46 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4577g00001 Pral-Chr4577 12078 17975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4577g00001 29 626 Calmodulin-binding Proteins AT2G36910 36.938 3.98e-117 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4577g00001 K05658 - gmx:100800293 1848.17