Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4576g00007 ATGCCAAAGGTTTCTGTCAAACTCTTTCTTCATTCCAGTGGAGACATTGCAGCAAAGTTTCAATATAACCAGGCAGTAATAGCTGCTATAAGGAGAGTCCCCAAGTCCACTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCCTTGTCAGCAGCAGACAAGGTTCTTGCTGAAATTTCTGGTAATAATGTTCAGGTTGATAGCCTAGATCCCCTAGTGCATCGGGCCATTGCCGCTGCATCTGCTGTTCCTGATCTTCGAGATCGATATGACCATATCCCTACCTACATTGAATCAAAACTTTTGCCATTTCAGCGAGAGGGGATTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCGTTTCTGAGTCATGGCCTGTGCTTATACTTGCACCATCTTCATTGCGGTTGCAATGGGCTTCTATGATTCAACAGTGGCTGGATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGCGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCTAATGCAAAAAGCAGCATCCATCTAGATGGACTGTTCAACATCATCTCGTATGATTTGGTTCCAAAGCTACAGAACATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAGTCACACTTTCTAAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGGTGTTTATAAAAACGTCCATGAATATGGTAACAGATACTGCAGGGGTGGATTATTTGGACTCTACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTGAAGCGCAGGCAACAGGTCTTCCTAGATTTGGATGCCAAGGACATGAGGCAAATCAATGCTTTATTTCGGGAGTTGGAGGTTGTTAAAGCCAAAATTAAGGCAGCCAAATCAAAAGATGAGGCTGAAACGCTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGAATCTGCTGAAGCCAAGATCCCAGCGGTTCTTGATTACATTGGAACTGTTGTTGAGGCAGGTTGCAAGTTTCTGATATTCGCACACCATCAGCCAATGATAGATTCAATACATGATTTTCTAATTAAAAAGAAGGTGGGTTGCATCCGCATTGATGGCAACACAGCCCCTGCATTTAGGCAAGCGTTGGTTACAGATTTCCAGGAAAAGGATTCTATTAAGGCAGCTGTGCTGTCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTCATTTTTGCGGAACTGTCCTGGACCCCAGGTGACCTAATTCAAGCAGAAGATCGGGCTCATAGAATTGGCCAGGTATCTTCAGTGAACATATACTACTTGCTAGCGAATGATACAGTTGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACACCATGGAGGTTGCAGCCAATCAGCCAGGGAATAGCCCTGCAAAGCAGCAAACTCTTGACCCCTTTGTGAAAAGATGTAATAACATGGATGAGCCAGAACAGCAGCCCAACCCGAAACGCCCCCGACCCTAA 1791 0.4294 MPKVSVKLFLHSSGDIAAKFQYNQAVIAAIRRVPKSTWNAKERLWMFPLSSLSAADKVLAEISGNNVQVDSLDPLVHRAIAAASAVPDLRDRYDHIPTYIESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTSCVSESWPVLILAPSSLRLQWASMIQQWLDIPSSDILVVLSQSGGSNKGGFTIVSSNAKSSIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCRGGLFGLYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLDAKDMRQINALFRELEVVKAKIKAAKSKDEAETLKFTQKNLINKIYTESAEAKIPAVLDYIGTVVEAGCKFLIFAHHQPMIDSIHDFLIKKKVGCIRIDGNTAPAFRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTMEVAANQPGNSPAKQQTLDPFVKRCNNMDEPEQQPNPKRPRP 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4576g00007 596 FunFam Chromatin remodeling factor18 77 351 - -
Pral4576g00007 596 ProSiteProfiles HARP domain profile. 1 74 IPR010003 -
Pral4576g00007 596 FunFam Chromatin remodeling factor18 362 592 - -
Pral4576g00007 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 556 IPR027417 -
Pral4576g00007 596 CDD SF2_C_SNF 400 524 - -
Pral4576g00007 596 Coils Coil 541 561 - -
Pral4576g00007 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 285 IPR014001 -
Pral4576g00007 596 CDD DEXHc_HARP_SMARCAL1 104 327 - -
Pral4576g00007 596 Gene3D - 80 333 IPR038718 -
Pral4576g00007 596 Pfam Helicase conserved C-terminal domain 405 513 IPR001650 -
Pral4576g00007 596 SMART ultradead3 100 293 IPR014001 -
Pral4576g00007 596 SMART helicmild6 430 513 IPR001650 -
Pral4576g00007 596 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 30 586 - -
Pral4576g00007 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 327 IPR027417 -
Pral4576g00007 596 Gene3D - 366 588 IPR027417 -
Pral4576g00007 596 Pfam SNF2-related domain 122 384 IPR000330 GO:0005524|GO:0140658
Pral4576g00007 596 Coils Coil 356 376 - -
Pral4576g00007 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 404 556 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4576g00007 Pral-Chr4576 17938 27466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4576g00007 365 544 RAD5 or RAD16-like Gene Family AT1G02670 30.978 3.74e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4576g00007 SNF2_N 1.1e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4576g00007 K14440 - gmx:100797654 1011.13