Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4576g00006 ATGGAGCTTGACGACTGGGACTTGAGCGCAGAGGATCTTGATTCTCTCGAAAAAGACGCTTTCCAAAAGATTGCTCAACTACGCAACTCCTCTTGCTCTGCTTCTGTTTCTTCTTCTTCCACTTCTTCCAACACTCAACAATTAACTGTACAACAACAGCATTCTGCAAAACCTCGTTGCAACGACTTGGAACGATCCCCTGCAAAACCCGTTTCTGATTCTCGTCCTGAAAGAGTTGAAGCTTTGTCTCCACAGTCTAGAGCGTTACCCTCGTCGCTAAAATCAGGAACAAACAGCGATGATCATTCAAAAGAAATGCCAAAGGTTTCTGTCAAACTCTTTCTTCATTCCAGTGGAGACATTGCAGCAAAGTTTCAATATAACCAGGCAGTAATAGCTGCTATAAGGAGAGTCCCCAAGTCCACTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCCTTGTCAGCAGCAGACAAGGTTCTTGCTGAAATTTCTGGTAATAATGTTCAGGTTGATAGCCTAGATCCCCTAGTGCATCGGGCCATTGCCGCTGCATCTGCTGTTCCTGATCTTCGAGATCGATATGACCATATCCCTACCTACATTGAATCAAAACTTTTGCCATTTCAGCGAGAGGGGATTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCGTTTCTGAGTCATGGCCTGTGCTTATACTTGCACCATCTTCATTGCGGTTGCAATGGGCTTCTATGATTCAACAGTGGCTGGATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGCGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCTAATGCAAAAAGCAGCATCCATCTAGATGGACTGTTCAACATCATCTCGTATGATTTGGTTCCAAAGCTACAGAACATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAGTCACACTTTCTAAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGGTGTTTATAAAAACGTCCATGAATATGGTAACAGATACTGCAGGGGTGGATTATTTGGACTCTACCAAGGTGCAAGTAACCATGAAGAATTGCACAATTTGATGAAGGCAACAGTGATGATTCGCAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTGAAGCGCAGGCAACAGGTCTTCCTAGATTTGGATGCCAAGGACATGAGGCAAATCAATGCTTTATTTCGGGAGTTGGAGGTTGTTAAAGCCAAAATTAAGGCAGCCAAATCAAAAGATGAGGCTGAAACGCTTAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGAATCTGCTGAAGCCAAGATCCCAGCGGTTCTTGATTACATTGGAACTGTTGTTGAGGCAGGTTGCAAGTTTCTGATATTCGCACACCATCAGCCAATGATAGATTCAATACATGATTTTCTAATTAAAAAGAAGGTGGGTTGCATCCGCATTGATGGCAACACAGCCCCTGCATTTAGGCAAGCGTTGGTTACAGATTTCCAGGAAAAGGATTCTATTAAGGCAGCTGTGCTGTCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTCATTTTTGCGGAACTGTCCTGGACCCCAGGTGACCTAATTCAAGCAGAAGATCGGGCTCATAGAATTGGCCAGGTATCTTCAGTGAACATATACTACTTGCTAGCGAATGATACAGTTGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACACCATGGAGGTTGCAGCCAATCAGCCAGGGAATAGCCCTGCAAAGCAGCAAACTCTTGACCCCTTTGTGAAAAGATGTAATAACATGGATGAGCCAGAACAGCAGCCCAACCCGAAACGCCCCCGACCCTAA 2106 0.4321 MELDDWDLSAEDLDSLEKDAFQKIAQLRNSSCSASVSSSSTSSNTQQLTVQQQHSAKPRCNDLERSPAKPVSDSRPERVEALSPQSRALPSSLKSGTNSDDHSKEMPKVSVKLFLHSSGDIAAKFQYNQAVIAAIRRVPKSTWNAKERLWMFPLSSLSAADKVLAEISGNNVQVDSLDPLVHRAIAAASAVPDLRDRYDHIPTYIESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTSCVSESWPVLILAPSSLRLQWASMIQQWLDIPSSDILVVLSQSGGSNKGGFTIVSSNAKSSIHLDGLFNIISYDLVPKLQNMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPGVYKNVHEYGNRYCRGGLFGLYQGASNHEELHNLMKATVMIRRLKKDVLSQLPVKRRQQVFLDLDAKDMRQINALFRELEVVKAKIKAAKSKDEAETLKFTQKNLINKIYTESAEAKIPAVLDYIGTVVEAGCKFLIFAHHQPMIDSIHDFLIKKKVGCIRIDGNTAPAFRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTMEVAANQPGNSPAKQQTLDPFVKRCNNMDEPEQQPNPKRPRP 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4576g00006 701 CDD SF2_C_SNF 505 629 - -
Pral4576g00006 701 SMART ultradead3 205 398 IPR014001 -
Pral4576g00006 701 FunFam Chromatin remodeling factor18 467 697 - -
Pral4576g00006 701 SMART helicmild6 535 618 IPR001650 -
Pral4576g00006 701 MobiDBLite consensus disorder prediction 32 104 - -
Pral4576g00006 701 FunFam Chromatin remodeling factor18 182 456 - -
Pral4576g00006 701 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 691 - -
Pral4576g00006 701 Gene3D - 472 693 IPR027417 -
Pral4576g00006 701 ProSiteProfiles HARP domain profile. 105 179 IPR010003 -
Pral4576g00006 701 Gene3D - 185 438 IPR038718 -
Pral4576g00006 701 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 661 IPR001650 -
Pral4576g00006 701 MobiDBLite consensus disorder prediction 32 57 - -
Pral4576g00006 701 Pfam SNF2-related domain 227 489 IPR000330 GO:0005524|GO:0140658
Pral4576g00006 701 MobiDBLite consensus disorder prediction 58 76 - -
Pral4576g00006 701 Coils Coil 461 481 - -
Pral4576g00006 701 Coils Coil 646 666 - -
Pral4576g00006 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 432 IPR027417 -
Pral4576g00006 701 Pfam Helicase conserved C-terminal domain 510 618 IPR001650 -
Pral4576g00006 701 CDD DEXHc_HARP_SMARCAL1 209 432 - -
Pral4576g00006 701 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 390 IPR014001 -
Pral4576g00006 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 661 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4576g00006 Pral-Chr4576 17396 27466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4576g00006 508 658 RAD5 or RAD16-like Gene Family AT1G11100 34.437 3.38e-17 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral4576g00006 SNF2_N 1.7e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4576g00006 K14440 - gmx:100797654 1097.42