Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4575g00004 ATGGCGTCTGGAACACCCACCATTTCGTTTAGTTTCTTGGTGATGCTGCTTCTGGGTGTGTTGGCCCCTATTAGTGATGCTCATAGCAGTGATCTTAAGGGTTTAGAGTGCTTGAAGGTTTCCTCTTCGGATTTCAGAAACTCTGTTCAAGGAATCATTGGTCTTTTGCAGCGTGTTGTCTCCATCTTTTCTAGATTTCCCAATGGACGAGATTTCCGTCTCTCCAATGCCATTAATGACTGCATCGACTTGCTCGATTTGTCTTTTGATGATCTCCAGTTGTCTGCCTCTGCTACTGATACTCCGGCGGGCCAGAAAAACGGCACGGGGAACTTGGGCTCTGATCTGAGAACATGGCTGAGTGCTGCACTTGCAAACCCACAGACATGCATGGAAGGGTTCGAAGGAATCAATAGCATTGTAGATAATCTAGTATCATCTCTTCTAAGCCAAATGATCTCATCGATCCAGCAACTCTTAACCCAGGTTCATCATGGTCCGGACGACTTCCCTACGAGCAATGTACAGTTCCCTTCATGGATCAAACCAAGGGATCAGAAGATCCTACAGTCAAGTAAGATTAATGCGGATGTTGTAGTAGCAGCAGATGGAACTGGGACTTTCACTAGAGTTGCAGATGCAGTAGAAGCAGCCCCTGATTATAGCATGAAACGTTTTGTGATATACGTGAAGAGGGGCGTGTACAAAGAAAATGTGGAGATCAAGAAGAAGAAATGGAACATCATGATGATCGGTGAAGGCATGGATGCCACTCTTATCACCGGTAATCGGAATTTCATCGACGGTTGGACCACATACCGATCGGCTACTTTCGCCGTTAACGGGAGAGGATTCATAGCACGAGACATTACCTTCCGGAACACGGCAGGTCCACAGAAGCACCAAGCGGTGGCCCTGAGATCAGGTTCTGACCTATCAGTTTTCTACCGCTGTGGCATCTATGGGTACCAAGACAGCCTCTTCACACACACAATGCGTCAATTCTACAGAGAATGTCGAATAAAAGGCACAGTGGATTTCATCTTCGGAGATGCCACAGTAGTGTTCCAAAAGTGCGAGATTCTAGCCAAAAAAGGGCTTCCAGGACAGAAAAACGCAATCACAGCTCAGGGAAGAAAAGACCAGCATGAACCAACAGGATTCTCCTTCCAATTCTGCGAAATCTCTGCAGATTCCGACCTTCTTCCTTTCGTTGGATCCACCGAAACATACCTGGGGAGGCCTTGGAAGGCATATTCTCGAACAATTTACATGCAAACCTACATAAACGACTTGGTGGACCCCCGAGGGTGGCTCGAGTGGAACGGCGATGATTCTTCTTTGGACACACTGTACTATGCGGAGTACATGAACGGTGGTCCAGGGGCTGCTCTGGAGAACCGAGTCAAATGGCCAGGTTTTCATGTGTTGAGGGACGCGAAGCAGGCTTATCCCTTCACAGTGGCCAATTTCATTCAAGGCGGTTTATGGCTGCCTCACACAGGTGTAATTTTCACAGCTGGTTTAAATGGTTGA 1536 0.474 MASGTPTISFSFLVMLLLGVLAPISDAHSSDLKGLECLKVSSSDFRNSVQGIIGLLQRVVSIFSRFPNGRDFRLSNAINDCIDLLDLSFDDLQLSASATDTPAGQKNGTGNLGSDLRTWLSAALANPQTCMEGFEGINSIVDNLVSSLLSQMISSIQQLLTQVHHGPDDFPTSNVQFPSWIKPRDQKILQSSKINADVVVAADGTGTFTRVADAVEAAPDYSMKRFVIYVKRGVYKENVEIKKKKWNIMMIGEGMDATLITGNRNFIDGWTTYRSATFAVNGRGFIARDITFRNTAGPQKHQAVALRSGSDLSVFYRCGIYGYQDSLFTHTMRQFYRECRIKGTVDFIFGDATVVFQKCEILAKKGLPGQKNAITAQGRKDQHEPTGFSFQFCEISADSDLLPFVGSTETYLGRPWKAYSRTIYMQTYINDLVDPRGWLEWNGDDSSLDTLYYAEYMNGGPGAALENRVKWPGFHVLRDAKQAYPFTVANFIQGGLWLPHTGVIFTAGLNG 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4575g00004 511 Gene3D - 190 509 IPR012334 -
Pral4575g00004 511 FunFam Pectinesterase 191 509 - -
Pral4575g00004 511 ProSitePatterns Pectinesterase signature 1. 222 241 IPR018040 -
Pral4575g00004 511 PANTHER PECTINESTERASE 70 499 - -
Pral4575g00004 511 CDD PMEI-like_4 9 164 - -
Pral4575g00004 511 SMART PMEI_2 27 159 IPR006501 GO:0004857
Pral4575g00004 511 Pfam Pectinesterase 197 494 IPR000070 GO:0030599|GO:0042545
Pral4575g00004 511 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 148 IPR035513 -
Pral4575g00004 511 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 163 IPR035513 -
Pral4575g00004 511 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Pral4575g00004 511 Pfam Plant invertase/pectin methylesterase inhibitor 73 151 IPR006501 GO:0004857
Pral4575g00004 511 SUPERFAMILY Pectin lyase-like 194 508 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4575g00004 Pral-Chr4575 15612 18083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4575g00004 9 509 Carbohydrate Esterase AT3G43270 58.221 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4575g00004 K01051 - qsa:O6P43_003777 670.618