Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4574g00017 ATGGCTTCCTCGACTCTCAAACTCTTCCTCCTTCTCTTCCCAATCTTCCTCACACAGACCTGGGCCTCTCCTACAACAACACTTCACCCAAATCTCACTTCCATTAGATCTTTCTGCAGAACCACTCCATACCCAGAAGCTTGCTTCGATTCTTTGAAGCTCGGCATTTCAATCAGCATTAGCCCAAACATCCTCAACTATCTGCTTCAGTCTCTGCAAGTTGCCATCTCCGAAGCCACCCAGCTCTCGGATCTATTCCACAATGCAGGAGGCGGTTCTGGTTTGAACCTCGTGGAGAAGCAGAAAGGGTCAATTCAAGACTGTAGGGAGCTTCATCTTTCAACATTGACTTCCCTCAAAAGATCACTCTCTGGAGTTCGTAATTCGCCAACTTCTTCCCGGAAGCTCGCCGATGCTAGGGCCTACCTCAGCGCCGCCATGACCAACAAGAACACTTGCTTGGAAGGTCTCGACTCTGCTTCCGGCTCTCTCAAGCCTGTTCTCGTGGACTCTACCATTAAAACTTACAAACATGTCAGCAACTCTCTGTCCATGCTCCCTAAGCCAGCTTTTAGAGGTTCCAGAGGCCATAAGAATAGGCGTCGTTTGCTGGGAGCTCCGGCGTGGCTGAAGAGGCGAGACCGTCGGATCTTGGATGGGGAAGAAAACAATCCAAATGAGATGCTTGTGGTGGCGGCGGATGGAACTGCGAACTTCACCACCATTACTGAAGCTGTGAACTATGCTCCCAGTAATAGCTTGTACAGGACAGTGATATATGTGAAGGCAGGGGTTTACGAGGAAAATGTGGAGATCCCAAGTGACAAGACCAACATTGTTCTGCTTGGAGATGGAAGCGATGTCACCCTCGTTACTGGTTACAGAAGCGTGGGCGATGGGTGGACCACCTTCAGATCTGCAACTTTAGCTGTGTCCGGTGATGGCTTTCTGGCACGAGACATAGCGATAGAAAATAGCGCAGGGCCGGAGAAGCACCAGGCAGTAGCGTTAAGAGTAAACGCAGACTTAACCACGCTGTACAGATGCGCCGTTTATGGCTACCAAGACACCCTCTACGTCCATTCCTTCCGACAGTTCTACCGAGAATGCGACATCTACGGCACCATAGACTTCATCTTCGGAAACGCCGCCGTCGTTTTCCAAGCCTGCGACATCGTTTCGAGAAAGCCAATGCCTCACCAGTTCACCGTCATCACAGCTCAATCACGAGACTCACCGGACGAGGACACCGGAATCTCAATCCAGAATTGCTCCGTCATTGCCACCGAAGACCTCTATACTAACTCTAGCAGCTCCAAGAGCTACCTCGGACGCCCGTGGAGGCCTTATTCTCGGACAGTGTACCTTGAGTCTTATATCGATGATTTCGTGGACCCAGAGGGGTGGACGGACTGGTCTGATGCCGATGGCGATGATTTGGAGACTCTGTACTATGGAGAGTATAATAATTATGGGCCGGGTTCGGGTACGGGTGGCAGGGTGAATTGGGTTGGGTACCATGTGATGGGCTATGAGGAGGCTTATAACTTTACGGTTTCTCAGTTCATTATGGGTGACGCTTGGCTTCAGTCAACTTCGGTCCCTTATGATGCTGGGATTTGA 1623 0.5071 MASSTLKLFLLLFPIFLTQTWASPTTTLHPNLTSIRSFCRTTPYPEACFDSLKLGISISISPNILNYLLQSLQVAISEATQLSDLFHNAGGGSGLNLVEKQKGSIQDCRELHLSTLTSLKRSLSGVRNSPTSSRKLADARAYLSAAMTNKNTCLEGLDSASGSLKPVLVDSTIKTYKHVSNSLSMLPKPAFRGSRGHKNRRRLLGAPAWLKRRDRRILDGEENNPNEMLVVAADGTANFTTITEAVNYAPSNSLYRTVIYVKAGVYEENVEIPSDKTNIVLLGDGSDVTLVTGYRSVGDGWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLTTLYRCAVYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVFQACDIVSRKPMPHQFTVITAQSRDSPDEDTGISIQNCSVIATEDLYTNSSSSKSYLGRPWRPYSRTVYLESYIDDFVDPEGWTDWSDADGDDLETLYYGEYNNYGPGSGTGGRVNWVGYHVMGYEEAYNFTVSQFIMGDAWLQSTSVPYDAGI 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4574g00017 540 PANTHER PECTINESTERASE 16 530 - -
Pral4574g00017 540 Pfam Pectinesterase 229 526 IPR000070 GO:0030599|GO:0042545
Pral4574g00017 540 NCBIfam pectinesterase inhibitor domain 7 187 IPR006501 GO:0004857
Pral4574g00017 540 SMART PMEI_2 30 185 IPR006501 GO:0004857
Pral4574g00017 540 Pfam Plant invertase/pectin methylesterase inhibitor 34 185 IPR006501 GO:0004857
Pral4574g00017 540 Gene3D - 223 540 IPR012334 -
Pral4574g00017 540 FunFam Pectinesterase 222 540 - -
Pral4574g00017 540 SUPERFAMILY Pectin lyase-like 226 538 IPR011050 -
Pral4574g00017 540 FunFam Pectinesterase 31 188 - -
Pral4574g00017 540 CDD PMEI-like_3 37 190 - -
Pral4574g00017 540 ProSitePatterns Pectinesterase signature 2. 372 381 IPR033131 -
Pral4574g00017 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 188 IPR035513 -
Pral4574g00017 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 186 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4574g00017 Pral-Chr4574 129330 131892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4574g00017 27 540 Carbohydrate Esterase AT2G26440 66.348 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4574g00017 - - gmx:100776969 797.734