Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4574g00013 ATGATGTTCAATGCTCAGGGTCCTGTGAAAAAATCTAGTCTCCTTGCCATCCTCAGTGGAAATTCTTGTGACAATAAACAAAAGCGGAAACAGGATGATTTTCAGGATCAATCTCCGTACCCCATTCCGGAACTTACTTCATCCGGGCGTCTGGAGGTTAATGTTTTGATCAAACCAACTGCTGATGAACTTCATCGAGTTTTTGAAACATTAGAGCCAAATTTTGTTTACCTGCAAGGCGAACAGCTAGAAGATAACGAGCAGATTGGGTCCCTAGTATGGGAAGATGTTGATCTGTCTAGCCCAGAAGCCTTATGTGGATTATTTTCTTCCAAGTTACCTAATACAGTTTATTTGGAAACTCCTAAAGGAGAAAATTTGGCAGAGGCTCTCCATTCGAAGGGAATTCCTTACACAATATATTGGAAAAGCGAATTTTCAAAGTATGCTGCATCACATTTTCGTCAAGCTTTTTTCTCAGTGGCACAAAGTACCTCCAGCCACACATGGGATGCTTTCCAGCTTGCTCTTGCTTCTTTCAAATTATACTGTTTACAAAACAATGTCTCACCTTCAAACGGCATGAAGAGCAGAAGCAAGCTTGGGCCACGAATGTTTGGTGACCCTCCTAACATTGATATTGCTCCATTTGAAGCAGACACGAATGGGGAAGAAAACTCACCTGAGACTATTTCTGCTCTGAGGATTTATGATGATGATGTGAACATGAGATTTCTTGTGTGCGGAGTTCCCTGCATGCTGGATGCTTGCTTACTGGAATCATTGGAGGACGGTCTCAATGCTCTCCTACGTACAGAAATACGGGGATGTAAACTTCACAACCGGACAAGTGCCCCACCACCTCCTCTTCAGGCAGGGACATTCTCACGTGGTGTGGTAACCATGCGTTGCGATATATCCACATGTAGTTCGGCTCATATATCACTCTTGGTGTCTGGTAGTGCAGATACATGCTTTAATGATCAGCTTTTGGAGAATTACATAAAAAAGGAGCTGATTGAGAAGAGTCAACTTGTTCAAGCATCAACTAATTGTGAAGAAAGCGACTTACCTTCCTCTGAGCCTCGACGGTCAGTCTCAATAGCTTGTGGGGCTAGTGTATTTGAAGTTTGCATGCAGGTTCCTACGTGGGCTTCACTGGTTCTGAGACAGGTTGCACCAGAAGTGTCATACCGCAGCCTAGTTATGCTGGGAGTAGCCAGTATTCAAGGATTGCCTGTTGCATCATTTAGGAAACTTGATGCTGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCGGAAAAAAATTGCCTTAATGACTCCATTTCTTATGAGCATCCTAGTTGGCTGATTCCTCCGCCGCCTACTCAAAAAAGATCAGGGCCTTTCTCTGGAATAAAGTCCGTCAATTCTTGTAGCCTTCAAGTCAGTGATAGTGGTAACAATAGAAAGAAATTGAACATTGCTGCAATGAGGCCAATCCCTCACTCAAATTGTCAGAAGATTCAACCTTTTTCTGGATTATCTGAGCGGGAAAGGCTTGATGGAGAACGTGCAAAATCAAATCTGCCGATGGCTCTAACGAAGCACCATGGTGCAGGCTCTAATCCAGTCACAAATAGGAAATCTTCAACTTCCTTTCAGGCTCAGCAGATCGTTACATTAAATCCACTACCCATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGGACCTGTTCAGAGGAGGAATTCTTGAGAGATGTCATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCGCCAGGTGGTCTTTCTGAATTCCCTGAAGCCATTCTGAATGCTAAACGCCTCGATCTTTTTAACTTGTACAGAGAGGTGGTATCGAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTTTAACAAATAGAATGACAGGTGTTGGCAATACACTTAAAAGACATTATGAAACTTATCTTCTGGAGTATGAACTAGCTCATGATGACGTGGATGGAGAGTGCTGCTTGTTGTGCCGCAGTAGCGCAGCTGGTGATTGGGTGAATTGCGGGATATGCGGTGAGTGGGCTCACTTTGGCTGTGATAGGCGTCAAGGACTTGGTGCATTTAAGGACTATGCTAAAACGGATGGGCTAGAGTACGTTTGCCCACATTGCAGCATTTCAAATTTCAGAAAGAAATCTCAGAAAACTTCAAACGGATATTAA 2250 0.436 MMFNAQGPVKKSSLLAILSGNSCDNKQKRKQDDFQDQSPYPIPELTSSGRLEVNVLIKPTADELHRVFETLEPNFVYLQGEQLEDNEQIGSLVWEDVDLSSPEALCGLFSSKLPNTVYLETPKGENLAEALHSKGIPYTIYWKSEFSKYAASHFRQAFFSVAQSTSSHTWDAFQLALASFKLYCLQNNVSPSNGMKSRSKLGPRMFGDPPNIDIAPFEADTNGEENSPETISALRIYDDDVNMRFLVCGVPCMLDACLLESLEDGLNALLRTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQLLENYIKKELIEKSQLVQASTNCEESDLPSSEPRRSVSIACGASVFEVCMQVPTWASLVLRQVAPEVSYRSLVMLGVASIQGLPVASFRKLDAERLLYFCSRQSEKNCLNDSISYEHPSWLIPPPPTQKRSGPFSGIKSVNSCSLQVSDSGNNRKKLNIAAMRPIPHSNCQKIQPFSGLSERERLDGERAKSNLPMALTKHHGAGSNPVTNRKSSTSFQAQQIVTLNPLPMKKHGCDRAPIRTCSEEEFLRDVMQFLILRGHSRLIPPGGLSEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCRSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGY 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4574g00013 749 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 8 749 IPR042293 -
Pral4574g00013 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 734 IPR013083 -
Pral4574g00013 749 MobiDBLite consensus disorder prediction 527 546 - -
Pral4574g00013 749 ProSiteProfiles ARID domain profile. 572 676 IPR001606 GO:0003677
Pral4574g00013 749 SUPERFAMILY ARID-like 572 686 IPR036431 GO:0003677
Pral4574g00013 749 SMART ARID_2 569 672 - -
Pral4574g00013 749 SUPERFAMILY FYVE/PHD zinc finger 668 736 IPR011011 -
Pral4574g00013 749 MobiDBLite consensus disorder prediction 24 45 - -
Pral4574g00013 749 Pfam ARID/BRIGHT DNA binding domain 575 672 IPR001606 GO:0003677
Pral4574g00013 749 Gene3D - 564 677 IPR036431 GO:0003677
Pral4574g00013 749 CDD PHD_ARID4_like 682 733 - -
Pral4574g00013 749 CDD ARID 574 672 - -
Pral4574g00013 749 SMART bright_3 573 677 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4574g00013 Pral-Chr4574 98338 107772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4574g00013 2 748 ARID Transcription Factor Family AT3G43240 63.963 0.0 964
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral4574g00013 ARID 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4574g00013 - - gmx:100775894 1189.48