LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral456g00011	ATGTCAACAGTGCCACATCCTTCTGATTTTAACCTTACAAGGGTAGTGATGAATCATACAGGATACGTACAATTTTGGCGCCGGGATGAGATCGGAGGATGGGTGATGGCATGGAAGGAGCCAGCTGACGAATGCAAGATACATAACTTCTGTGGAAACTTTGGCAGTTGCAATATGAATAATTCGCCATACTGTAGGTGTTTGCCTGGATTCGCTTCTAAGTCGCAAGGGGAGAATCAGGTTCCATCCTCTGAAGCTGGAGGTTGCTTCAGAAAAACAACATCATGCGGGCAAAACACGACAGCGTTCATAGACTTGAAGAACGTGAAAGTGAGAAAAGCAGACAAAGCAGTCTACGCAGCGAATCCAACAGAGTGCCAATCTAAGTGCCTTAATCCCAATGGGTGCCCCAATTGCACAGCTTATTCATATGATGCATCAACAAATTATAGTAGGACGTTCTTATCGTGTTCTATTTGGACCGCTGATTTGCCTACCCTTCAAGAGGAGATTGATACGGGTGTTAATCTTTCTATCCCGATAAGTACACTAGATATAGAACCAACTCCAAGGACGTGCAAGCCTTGCGGTGTATTCACAATTCCTTATCCGCTGAGCACCGAACCAAGTTGTGGTGATCCCATTTACTCTCATTTTAAGTGCGACTCACCAACCGGGCTGCTTCATTTCACAGTGGGAGAAGAGAGTTATAGAGTTACTAACATTGATCCAGACGAGAGATCGTTCTCTATTCAAATCAAAGATTCGGATAATTGTGCTGCAAGCAGTCTAGGGCGTCCGCTCGATCCGCCATTTAGTTTGTCTCAACAGTGCGATGGTGGGGCAAAGACAATAAAGATTAATTGGGATCCTCCAGGTGAACCTCCCTGTACTAAGTCCACAGACTGCGAGCGCTGGTCTCATTCAACTTGCAAGGCAACCAGTAATGGAAATGGAAGATGCCTCTGCGATGAAAAATATCAATGGAATGGCCACAGTTTAAGCTGTACGCAAGAGCCTCCAAGAAGAAACAGCTCTAGAGTTTTGATATTAGCGGTGACACTTTCAACCTTGATTTTCTTGGCCTGCATTATAACTTCTGCTTACATTTGGAGAAGAGTAGCCTCTAATCAAGAAAAGGGAGAAAATCAAAGAACGAGAGATGTCCTACATGACAACGAGAGATATATCAAAGATTTCATAGACGCCGAGAGGACAGAGGAAAAGGACGGTGAAGGGATAGAGGTACCTTATATGGATTTTAATAGCATCCTTTTAGCCACGGATAACTTCTCAGATGTGAACAAGCTTGGACGTGGGGGTTATGGACCTGTGTACAAGGGCAAGCTTCAAGGAGGTCAAGATATTGCAGTAAAGAGGCTTTCAAGTGTTTCTTCACAAGGAATGAAGGAATTCAAGAATGAAGTTGTCTTGATATCCAAACTTCAACATCGGAACCTTGTTAGACTTTTGGGCTATTGCATTACAGGACAAGAAAAAATATTACTTTATGAATACATGCCAAACAAGAGCTTAGACACATTCTTATTTGATCGTACACGAAGAGTGATTTTGGATTGGCCAATGCGTTTTGACATAATTTTAGGAGTTGCTAGAGGAATGTTATATCTTCATCAAGACTCTAGATTGAGAGTGATTCATAGAGATTTGAAAATTAGTAATATTCTTTTGGATGAGGAGATGCAACCAAAAATTTCAGATTTTGGACTTGCAAAAATATTTGGAGGCAAGGAAATTGAGGCCAACACTGAAAGAATAGTTGGAACTTATGGATACATGGCTCCAGAGTATGCATTGGATGGATTTTTCTCGATTAAATCAGATGTTTTCAGTTTTGGGGTTGTAATGCTTGAAATTATCAGTGGAAAAAAGAACACGGGATTCTTTCAATCCAAACAAACTTCCAGCCTTCTGGGTTATGCATGGAGGCTATGGACGGAGAATAACCTATTGGATTTAATGGATCGATCTTTGAATGAAAGTTGCAATGCAAATCAATTCATCAAGTGTGCACAAGTAAGTCTATTGTGTGTGCAAGATGAACCAGGAGACAGGCCCACCATGTCGCAAGTATTAATAATGCTTGAAAGTGAGACTGCAAGCCTTCCAACTCCAAAGCAACCGACCTTTTTTATGAGCAGTAGCAGGGGCCTTTCTAGCTCTGCTTCTTCTTCCAGTAGACCTGAAGGAATTCTTCCTACTGACAGTACCTATCAACAAGGTCGGTAA	2250	0.4196	MSTVPHPSDFNLTRVVMNHTGYVQFWRRDEIGGWVMAWKEPADECKIHNFCGNFGSCNMNNSPYCRCLPGFASKSQGENQVPSSEAGGCFRKTTSCGQNTTAFIDLKNVKVRKADKAVYAANPTECQSKCLNPNGCPNCTAYSYDASTNYSRTFLSCSIWTADLPTLQEEIDTGVNLSIPISTLDIEPTPRTCKPCGVFTIPYPLSTEPSCGDPIYSHFKCDSPTGLLHFTVGEESYRVTNIDPDERSFSIQIKDSDNCAASSLGRPLDPPFSLSQQCDGGAKTIKINWDPPGEPPCTKSTDCERWSHSTCKATSNGNGRCLCDEKYQWNGHSLSCTQEPPRRNSSRVLILAVTLSTLIFLACIITSAYIWRRVASNQEKGENQRTRDVLHDNERYIKDFIDAERTEEKDGEGIEVPYMDFNSILLATDNFSDVNKLGRGGYGPVYKGKLQGGQDIAVKRLSSVSSQGMKEFKNEVVLISKLQHRNLVRLLGYCITGQEKILLYEYMPNKSLDTFLFDRTRRVILDWPMRFDIILGVARGMLYLHQDSRLRVIHRDLKISNILLDEEMQPKISDFGLAKIFGGKEIEANTERIVGTYGYMAPEYALDGFFSIKSDVFSFGVVMLEIISGKKNTGFFQSKQTSSLLGYAWRLWTENNLLDLMDRSLNESCNANQFIKCAQVSLLCVQDEPGDRPTMSQVLIMLESETASLPTPKQPTFFMSSSRGLSSSASSSSRPEGILPTDSTYQQGR	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral456g00011	749	CDD	STKc_IRAK	437	703	-	-
	Pral456g00011	749	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	49	726	-	-
	Pral456g00011	749	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	552	564	IPR008271	GO:0004672\|GO:0006468
	Pral456g00011	749	ProSiteProfiles	PAN/Apple domain profile.	96	182	IPR003609	-
	Pral456g00011	749	Gene3D	Phosphorylase Kinase; domain 1	398	506	-	-
	Pral456g00011	749	SMART	ntp_6	98	181	IPR003609	-
	Pral456g00011	749	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	507	710	-	-
	Pral456g00011	749	ProSiteProfiles	EGF-like domain profile.	41	78	IPR000742	-
	Pral456g00011	749	ProSiteProfiles	Protein kinase domain profile.	431	717	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral456g00011	749	SMART	serkin_6	431	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral456g00011	749	CDD	EGF_CA	43	71	-	-
	Pral456g00011	749	Pfam	Protein tyrosine and serine/threonine kinase	435	699	IPR001245	GO:0004672\|GO:0006468
	Pral456g00011	749	Pfam	S-locus glycoprotein domain	9	74	IPR000858	GO:0048544
	Pral456g00011	749	Gene3D	Transferase(Phosphotransferase) domain 1	507	714	-	-
	Pral456g00011	749	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230	396	506	-	-
	Pral456g00011	749	PIRSF	SRK	1	192	IPR024171	GO:0004674
	Pral456g00011	749	PIRSF	SRK	286	748	IPR024171	GO:0004674
	Pral456g00011	749	SUPERFAMILY	Protein kinase-like (PK-like)	414	731	IPR011009	-
	Pral456g00011	749	MobiDBLite	consensus disorder prediction	709	749	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral456g00011	Pral-Chr456	66946	70997	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral456g00011	406	732	Receptor kinase-like Gene Family	AT4G05200	54.354	5.70e-126	390

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral456g00011		PK_Tyr_Ser-Thr	1.9e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral456g00011	-		-	pcin:129313312	876.315