Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4567g00002 ATGGAGGCGCAAGATCGTTTTTCGGAAGACTCTTCATCTGTTTGGGACCTAGATTGCCTGTTAGATTTCAGCTTGGATGAGAATTTAGCTCTCTCCTTAGACGACTATCATCCTAATTCAGAGGTTCCTCAAAGTCTGGAGCCTCCTTCTCAAGAGATTCCTAGTTCCGAGAAGGTCCGCAAGCGAGACCCCAGGTTGATTTGTTCCAATTACCTGGCCGGTCGGGTCCCGTGTGCATGCCCGGAGCTTGATGCTAAGCTTGAGGAAGAAGGTTTTCCTGGTAAGAAGCGCGCTCGCACCGTGCGGGTATCGGCTGGGATTGCACGGTGCCAGGTACCTGGGTGTGAGGCAGATATTAGTGAGCTCAAAGGGTATCATCGGAGGCACAGGGTTTGTTTGCGTTGCGCGAATGCTAGTACGGTTATGCTTGATGGAGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTGTCAGATTTTGATGAAGGTAAACGAAGCTGTAGAAGAAAATTAGAGCGCCACAACAACCGAAGGCGTAGAAAACCAACAGAAACCAGGGCTGCAGAAGATCATGAAGTTCAACCTGTCAAACAGACTGAGGATGATGTGGGAAAAGATAGTTCGCATATAAGCAGTGAGATAAATGACATAGAAATTGCCCTGGAGCATGAAGACGGACAGCTTACTGCGCCATCTTCGGCTCCTGATACCCTGAACATTAAAAATGATAGTTTTGGGTCCTTTGTTGCTTGCGGTGAAACACAAGTGAATGGTGGAAAAGAGAATTCTAACATTTCTTATTCACCATCGTATTGTGTAAAGAGTGCTTACTCGTCTATGTGCCCAACAGGTCGGGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGAAGGCTACGGCATCAAATATTCCAGTGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGTTATATCCGGCCCGGGTGCACAATTCTGACAGTTTTTGTTACTATGCCTAAATTTATGTGGACAAGTTTACTTGAAGACCCTCAGTATTATGTGCAAGACATAGTAGCTCCAGGAAAGATGCTATGTGGAAGAGGCACCATATTTGTTCATCTAAATGACATGGTCTTCTGCGTTTTGAAAGATAAAACTACTGTGATGGAAGTTCAGATAAAGGTGCATGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTACAGCCTAAGTTTCGGCTTCTGGTGTCTTTTTCAGGAAAGTATTTAAAGTATGAATATTGTGTTGCATCTCCTCATAACTGGGCAGGAGATGGCATTTCCTGTGCTTTTGACAATCAGTTGTACAAGATTTGTGTCCCACATACAGAGCCAAACATATTTGGACCTGCATTTATTGAGGTGGAGAACGAGTCTGGTCTCTCAAACTTCATTCCTGTGCTCATTGGGGACGCAGAAACCTGCTCTGAATTGGAGACAATGCAGCAAAAACTAGACATGTCTCTTCTTTCGAAACAAATGCAGGCTGCGTCTGGCAGTTCTATTTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATACAGCATACTCAGACTTACTGTTAGATATAGCATGGCTGCTTAAGGATCCTACTTCAGAAGATTTTCAGAGAGCCATGACAGCTTCACAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGAATTAATGGTCATTTTGGAGAAAATATTACGGAATTTGAATATTTTGACTGAAAGCATGGAAATGAACAATGTGCTTAACAGAATGAGTGAGGCTGACGTGACATTATTGCTGAAACACACATGTCAAGCTAGAGAGTTCCTTTATCAGAAACATCAGAGGGGTGGAGATTTAGTCTTGCACTCTGTTTCTTCTGAAATGGAAGGCCGTAAAGTTGCTCCAAGCTGCTATCAAGATAACATACCATCAGTTGTCACTATCAGCAATCAGGGTGCCGAGTCAAGGGCAGATGCTAAATTGGGGGTGAGAAGTCCAATCTGGGCTGACAAAAGTGAAAGGATACCTCTTTTGGGTAGTGATATTATAATGAACATGGAAGAGTTGCCTCCTCCATTTGGTTATCGACATCTTGCTAGGGGATTCTTGTGCTCACGGCCGGCCATTCTCATGATTGCTTCAGTTGCTGTGTGTCTTGGGGTTTGTGCTGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTCGCAGTATCCATTAGAAGGTGCCTGTTCAGCAATTCATAG 2313 0.4419 MEAQDRFSEDSSSVWDLDCLLDFSLDENLALSLDDYHPNSEVPQSLEPPSQEIPSSEKVRKRDPRLICSNYLAGRVPCACPELDAKLEEEGFPGKKRARTVRVSAGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTETRAAEDHEVQPVKQTEDDVGKDSSHISSEINDIEIALEHEDGQLTAPSSAPDTLNIKNDSFGSFVACGETQVNGGKENSNISYSPSYCVKSAYSSMCPTGRVSFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTVFVTMPKFMWTSLLEDPQYYVQDIVAPGKMLCGRGTIFVHLNDMVFCVLKDKTTVMEVQIKVHAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKYEYCVASPHNWAGDGISCAFDNQLYKICVPHTEPNIFGPAFIEVENESGLSNFIPVLIGDAETCSELETMQQKLDMSLLSKQMQAASGSSICSFCEAFALRHTAYSDLLLDIAWLLKDPTSEDFQRAMTASQIQRFCYLIDFLMCNELMVILEKILRNLNILTESMEMNNVLNRMSEADVTLLLKHTCQAREFLYQKHQRGGDLVLHSVSSEMEGRKVAPSCYQDNIPSVVTISNQGAESRADAKLGVRSPIWADKSERIPLLGSDIIMNMEELPPPFGYRHLARGFLCSRPAILMIASVAVCLGVCAALLHPGRVGEFAVSIRRCLFSNS 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4567g00002 770 Coils Coil 770 770 - -
Pral4567g00002 770 MobiDBLite consensus disorder prediction 185 212 - -
Pral4567g00002 770 Pfam SBP domain 110 184 IPR004333 GO:0003677
Pral4567g00002 770 Gene3D - 106 171 IPR036893 GO:0003677|GO:0005634
Pral4567g00002 770 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Pral4567g00002 770 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 592 IPR044817 GO:0003677
Pral4567g00002 770 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Pral4567g00002 770 MobiDBLite consensus disorder prediction 175 212 - -
Pral4567g00002 770 MobiDBLite consensus disorder prediction 40 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4567g00002 Pral-Chr4567 8 5892 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4567g00002 11 763 SBP-box Gene Family AT5G18830 47.014 0.0 680
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4567g00002 SBP 5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4567g00002 - - pcin:129308496 1345.87