Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4567g00001 ATGGAGGCGCAAGATCGTTTTTCGGAAGACTCTTCATCTGTTTGGGACCTAGATTGCCTGTTAGATTTCAGCTTGGATGAGAATTTAGCTCTCTCCTTAGACGACTATCATCCTAATTCAGAGGTTCCTCAAAGTCTGGAGCCTCCTTCTCAAGAGATTCCTAGTTCCGAGAAGGTCCGCAAGCGAGACCCCAGGTTGATTTGTTCCAATTACCTGGCCGGTCGGGTCCCGTGTGCATGCCCGGAGCTTGATGCTAAGCTTGAGGAAGAAGGTTTTCCTGGTAAGAAGCGCGCTCGCACCGTGCGGGTATCGGCTGGGATTGCACGGTGCCAGGTACCTGGGTGTGAGGCAGATATTAGTGAGCTCAAAGGGTATCATCGGAGGCACAGGGTTTGTTTGCGTTGCGCGAATGCTAGTACGGTTATGCTTGATGGAGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTGTCAGATTTTGATGAAGGTAAACGAAGCTGTAGAAGAAAATTAGAGCGCCACAACAACCGAAGGCGTAGAAAACCAACAGAAACCAGGGCTGCAGAAGATCATGAAGTTCAACCTGTCAAACAGACTGAGGATGATGTGGGAAAAGATAGTTCGCATATAAGCAGTGAGATAAATGACATAGAAATTGCCCTGGAGCATGAAGACGGACAGCTTACTGCGCCATCTTCGGCTCCTGATACCCTGAACATTAAAAATGATAGTTTTGGGTCCTTTGTTGCTTGCGGTGAAACACAAGTGAATGGTGGAAAAGAGAATTCTAACATTTCTTATTCACCATCGTATTGTGTAAAGAGTGCTTACTCGTCTATGGTCGGGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGAAGGCTACGGCATCAAGTATATTAAAGCATTGTTATTACAGATATTCCAGTGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGTTATATCCGGCCCGGGTGCACAATTCTGACAGTTTTTGTTACTATGCCTAAATTTATGTGGACAAGTTTACTTGAAGACCCTCAGTATTATGTGCAAGACATAGTAGCTCCAGGAAAGATGCTATGTGGAAGAGGCACCATATTTGTTCATCTAAATGACATGGTCTTCTGCGTTTTGAAAGATAAAACTACTGTGATGGAAGTTCAGATAAAGGTGCATGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTACAGCCTAAGTTTCGGCTTCTGGTGTCTTTTTCAGGAAAGTATTTAAAGTATGAATATTGTGTTGCATCTCCTCATAACTGGGCAGGAGATGGCATTTCCTGTGCTTTTGACAATCAGTTGTACAAGATTTGTGTCCCACATACAGAGCCAAACATATTTGGACCTGCATTTATTGAGGTGGAGAACGAGTCTGGTCTCTCAAACTTCATTCCTGTGCTCATTGGGGACGCAGAAACCTGCTCTGAATTGGAGACAATGCAGCAAAAACTAGACATGTCTCTTCTTTCGAAACAAATGCAGGCTGCGTCTGGCAGTTCTATTTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATACAGCATACTCAGACTTACTGTTAGATATAGCATGGCTGCTTAAGGATCCTACTTCAGAAGATTTTCAGAGAGCCATGACAGCTTCACAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGAATTAATGGTCATTTTGGAGAAAATATTACGGAATTTGAATATTTTGACTGAAAGCATGGAAATGAACAATGTGCTTAACAGAATGAGTGAGGCTGACGTGACATTATTGCTGAAACACACATGTCAAGCTAGAGAGTTCCTTTATCAGAAACATCAGAGGGGTGGAGATTTAGTCTTGCACTCTGTTTCTTCTGAAATGGAAGGCCGTAAAGTTGCTCCAAGCTGCTATCAAGATAACATACCATCAGTTGTCACTATCAGCAATCAGGGTGCCGAGTCAAGGGCAGATGCTAAATTGGGGGTGAGAAGTCCAATCTGGGCTGACAAAAGTGAAAGGATACCTCTTTTGGGTAGTGATATTATAATGAACATGGAAGAGTTGCCTCCTCCATTTGGTTATCGACATCTTGCTAGGGGATTCTTGTGCTCACGGCCGGCCATTCTCATGATTGCTTCAGTTGCTGTGTGTCTTGGGGTTTGTGCTGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTCGCAGTATCCATTAGAAGGTGCCTGTTCAGCAATTCATAG 2328 0.439 MEAQDRFSEDSSSVWDLDCLLDFSLDENLALSLDDYHPNSEVPQSLEPPSQEIPSSEKVRKRDPRLICSNYLAGRVPCACPELDAKLEEEGFPGKKRARTVRVSAGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTETRAAEDHEVQPVKQTEDDVGKDSSHISSEINDIEIALEHEDGQLTAPSSAPDTLNIKNDSFGSFVACGETQVNGGKENSNISYSPSYCVKSAYSSMVGYLLSFMIGILRSFLEGYGIKYIKALLLQIFQWLASMPVELEGYIRPGCTILTVFVTMPKFMWTSLLEDPQYYVQDIVAPGKMLCGRGTIFVHLNDMVFCVLKDKTTVMEVQIKVHAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKYEYCVASPHNWAGDGISCAFDNQLYKICVPHTEPNIFGPAFIEVENESGLSNFIPVLIGDAETCSELETMQQKLDMSLLSKQMQAASGSSICSFCEAFALRHTAYSDLLLDIAWLLKDPTSEDFQRAMTASQIQRFCYLIDFLMCNELMVILEKILRNLNILTESMEMNNVLNRMSEADVTLLLKHTCQAREFLYQKHQRGGDLVLHSVSSEMEGRKVAPSCYQDNIPSVVTISNQGAESRADAKLGVRSPIWADKSERIPLLGSDIIMNMEELPPPFGYRHLARGFLCSRPAILMIASVAVCLGVCAALLHPGRVGEFAVSIRRCLFSNS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4567g00001 775 Pfam SBP domain 110 184 IPR004333 GO:0003677
Pral4567g00001 775 MobiDBLite consensus disorder prediction 185 212 - -
Pral4567g00001 775 Gene3D - 106 171 IPR036893 GO:0003677|GO:0005634
Pral4567g00001 775 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Pral4567g00001 775 SUPERFAMILY SBT domain 108 188 IPR036893 GO:0003677|GO:0005634
Pral4567g00001 775 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 595 IPR044817 GO:0003677
Pral4567g00001 775 MobiDBLite consensus disorder prediction 40 59 - -
Pral4567g00001 775 MobiDBLite consensus disorder prediction 175 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4567g00001 Pral-Chr4567 8 6091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4567g00001 11 768 SBP-box Gene Family AT5G18830 44.388 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4567g00001 SBP 5.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4567g00001 - - pcin:129308496 1280.39