Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4566g00010 ATGGAAACTCAAGCTCCTTCTACTTCGACTCCAGCCCAATCGCCCTCATCGCCGCCGCCGCCGCCGCAGCAGTCACTGCCACCATCGGTCCTCGATCGGCCGCCGGGGGTTTCTGAAATGGAGGCGCAAGATCGTTTTTCGGAAGACTCTTCATCTGTTTGGGACCTAGATTGCCTGTTAGATTTCAGCTTGGATGAGAATTTAGCTCTCTCCTTAGACGACTATCATCCTAATTCAGAGGTTCCTCAAAGTCTGGAGCCTCCTTCTCAAGAGATTCCTAGTTCCGAGAAGGTTCGCAAGCGAGACCCCAGGTTGATTTGTTCCAATTACCTGGCCGGTCGGGTCCCGTGTGCATGCCCGGAGCTTGATGCTAAGCTTGAGGAAGAAGGTTTTCCTGGTAAGAAGCGCGCTCGCACCGTGCGGGTATCGGCTGGGATTGCACGGTGCCAGGTACCTGGGTGTGAGGCAGATATTAGTGAGCTCAAAGGGTATCATCGGAGGCACAGGGTTTGTTTGCGTTGCGCGAATGCTAGTACGGTTATGCTTGATGGAGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACATATTATCAGATTTTGATGAAGGTAAACGAAGCTGTAGAAGAAAATTAGAGCGCCACAACAACCGAAGGCGTAGAAAACCAACAGAAACCAGGGCTGCAGAAGATCATGAAGTTCAACCTGTCAAACAGACTGAGGATGATGTGGGAAAAGATAGTTCGCATATAAGCAGTGAGATAAATGACATAGAAATTGCCCTGGAGCATGAAGACGGACAGCTTACTGCGCCATCTTCGGCTCCTGATACCCTGAACATTAAAAATGATAGTTTTGGGTCCTTTGTTGCTTGCGGTGAAACACAAGTGAATGGTGGAAAAGAGAATTCTAACATTTCTTATTCACCATCGTATTGTGTAAAGAGTGCTTACTCGTCTATGGTCGGGTATCTTTTAAGCTTTATGATTGGAATCCTGCGGAGTTTCCTAGAAGGCTACGGCATCAAGTATATTAAAGCATTGTTATTACAGATATTCCAGTGGTTGGCCAGTATGCCTGTTGAGCTGGAGGGTTATATCCGGCCCGGGTGCACAATTCTGACAGTTTTTGTTACTATGCCTAAATTTATGTGGACAAGTTTACTTGAAGACCCTCAGTATTATGTGCAAGACATAGTAGCTCCAGGAAAGATGCTATGTGGAAGAGGCACCATATTTGTTCATCTAAATGACATGGTCTTCTGCGTTTTGAAAGATAAAACTACTGTGATGGAAGTTCAGATAAAGGTGCATGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGAAAACCTATGGAATTTGTTGCTTGTGGAAGTAACTTGCTACAGCCTAAGTTTCGGCTTCTGGTGTCTTTTTCAGGAAAGTATTTAAAGTATGAATATTGTGTTGCATCTCCTCATAACTGGGCAGGAGATGGCATTTCCTGTGCTTTTGACAATCAGTTGTACAAGATTTGTGTCCCACATACAGAGCCAAACATATTTGGACCTGCATTTATTGAGGTGGAGAACGAGTCTGGTCTCTCAAACTTCATTCCTGTGCTCATTGGGGACGCAGAAACCTGCTCTGAATTGGAGACAATGCAGCAAAAACTAGACATGTCTCTTCTTTCGAAACAAATGCAGGCTGCGTCTGGCAGTTCTATTTGCAGCTTCTGTGAAGCTTTTGCACTGAGACATACAGCATACTCAGACTTACTGTTAGATATAGCATGGCTGCTTAAGGATCCTACTTCAGAAGATTTTCAGAGAGCCATGACAGCTTCACAAATTCAAAGATTTTGTTATTTGATAGACTTTCTGATGTGCAATGAATTAATGGTCATTTTGGAGAAAATATTACGGAATTTGAATATTTTGACTGAAAGCATGGAAATGAACAATGTGCTTAACAGAATGAGTGAGGCTGACGTGACATTATTGCTGAAACACACATGTCAAGCTAGAGAGTTCCTTTATCAGAAACATCAGAGGGGTGGAGATTTAGTCTTGCACTCTGTTTCTTCTGAAATGGAAGGCCGTAAAGTTGCTCCAAGCTGCTATCAAGATAACATACCATCAGTTGTCACTATCAGCAATCAGGGTGCCGAGTCAAGGGCAGATGCTAAATTGGGGGTGAGAAGTCCAATCTGGGCTGACAAAAGTGAAAGGATGCCTCTTTTGGGTAGTGATATTATAATGAACATGGAAGAGTTGCCTCCTCCATTTGGTTATCGACATCTTGCTAGGGGATTCTTGTGCTCACGGCCGGCCATTCTCATGATTGCTTCAGTTGCTGTGTGTCTTGGGGTTTGTGCTGCCCTCCTTCATCCTGGGAGGGTTGGTGAGTTCGCAGTATCCATTAGAAGGTGCCTGTTCAGCAATTCATAG 2445 0.4483 METQAPSTSTPAQSPSSPPPPPQQSLPPSVLDRPPGVSEMEAQDRFSEDSSSVWDLDCLLDFSLDENLALSLDDYHPNSEVPQSLEPPSQEIPSSEKVRKRDPRLICSNYLAGRVPCACPELDAKLEEEGFPGKKRARTVRVSAGIARCQVPGCEADISELKGYHRRHRVCLRCANASTVMLDGEAKRYCQQCGKFHILSDFDEGKRSCRRKLERHNNRRRRKPTETRAAEDHEVQPVKQTEDDVGKDSSHISSEINDIEIALEHEDGQLTAPSSAPDTLNIKNDSFGSFVACGETQVNGGKENSNISYSPSYCVKSAYSSMVGYLLSFMIGILRSFLEGYGIKYIKALLLQIFQWLASMPVELEGYIRPGCTILTVFVTMPKFMWTSLLEDPQYYVQDIVAPGKMLCGRGTIFVHLNDMVFCVLKDKTTVMEVQIKVHAPRLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKYEYCVASPHNWAGDGISCAFDNQLYKICVPHTEPNIFGPAFIEVENESGLSNFIPVLIGDAETCSELETMQQKLDMSLLSKQMQAASGSSICSFCEAFALRHTAYSDLLLDIAWLLKDPTSEDFQRAMTASQIQRFCYLIDFLMCNELMVILEKILRNLNILTESMEMNNVLNRMSEADVTLLLKHTCQAREFLYQKHQRGGDLVLHSVSSEMEGRKVAPSCYQDNIPSVVTISNQGAESRADAKLGVRSPIWADKSERMPLLGSDIIMNMEELPPPFGYRHLARGFLCSRPAILMIASVAVCLGVCAALLHPGRVGEFAVSIRRCLFSNS 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4566g00010 814 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Pral4566g00010 814 MobiDBLite consensus disorder prediction 12 29 - -
Pral4566g00010 814 MobiDBLite consensus disorder prediction 214 251 - -
Pral4566g00010 814 Gene3D - 145 210 IPR036893 GO:0003677|GO:0005634
Pral4566g00010 814 MobiDBLite consensus disorder prediction 79 98 - -
Pral4566g00010 814 SUPERFAMILY SBT domain 147 227 IPR036893 GO:0003677|GO:0005634
Pral4566g00010 814 Pfam SBP domain 149 223 IPR004333 GO:0003677
Pral4566g00010 814 MobiDBLite consensus disorder prediction 1 50 - -
Pral4566g00010 814 MobiDBLite consensus disorder prediction 224 251 - -
Pral4566g00010 814 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 634 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4566g00010 Pral-Chr4566 40021 46279 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4566g00010 33 807 SBP-box Gene Family AT5G18830 43.704 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral4566g00010 SBP 5.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4566g00010 - - pcin:129308496 1306.58