Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4566g00007 ATGGCGAGATACCGAAGCCGGAGCAGAAGCTCCAGCCCTCGCCGGCGAAGCAGAACCCCACGGCGTGGACGCAAACGGTACGACGATGAACCTCGTGATCGCTACCGCGAAAGCAGGTCCTACAGAGACCGCCGCTCTCCTGCTCCTTCAGGCTTGCTGGTCCGTAATCTTCCGCTCGACGCGAGGCCTGAAGATCTCAGGGGCCCCTTTGAGCGCTATGGCCCTGTGAAAGATGTATATCTTCCTAAGAATTACTACACTGGTGAGCCCCGGGGCTTTGGCTTTGTCAAATTCCGGTATGCTGAAGATGCTGCTGAAGCAAAGCAACAACTTAATCATACTGTTATTGGCGGGCGGGAAATAAGAATTGTGTATGCTGAGGAAAATAGGAAAACTCCTCAAGAAATGCGTATGAATGGTCGCATAAGTGGTCGATATGGAGGAAATGGTAGAAGGAGAACTCCCACAAGATCCCCAAGGCGCCGATATCGTTCCTACTCAAGGTCTCCATCACCGGCTGGGGATCACACAAGGGATCATAGGGACAGGGACAATTATTATTCTCCTGAGCGATCAAGATCTTATTCCATGTCTCCTTCACCTCGTGGAAGGAAGGACTACAGGAGGTCCCCAAGTCCAAGGGAGAATGGTCGGAGTCCTGATGACAGGAGGGATCATACACGTAGTAGATCAGAGACTCCCAGGGGTAATGGTCGTAGTCCCTCAAGGTCTCGTTCACGGTCATACAGGTATGGCTTCTGCAGGTCTGCCAACTTGAGTAACCATATTTGCCAATCATTGCATGTCAAATTTCTGCCCATTCCAAGTATGATCCATAACGATCATGTTTAG 852 0.5094 MARYRSRSRSSSPRRRSRTPRRGRKRYDDEPRDRYRESRSYRDRRSPAPSGLLVRNLPLDARPEDLRGPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYAEDAAEAKQQLNHTVIGGREIRIVYAEENRKTPQEMRMNGRISGRYGGNGRRRTPTRSPRRRYRSYSRSPSPAGDHTRDHRDRDNYYSPERSRSYSMSPSPRGRKDYRRSPSPRENGRSPDDRRDHTRSRSETPRGNGRSPSRSRSRSYRYGFCRSANLSNHICQSLHVKFLPIPSMIHNDHV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4566g00007 283 SUPERFAMILY RNA-binding domain, RBD 47 154 IPR035979 GO:0003676
Pral4566g00007 283 MobiDBLite consensus disorder prediction 234 248 - -
Pral4566g00007 283 MobiDBLite consensus disorder prediction 1 22 - -
Pral4566g00007 283 MobiDBLite consensus disorder prediction 1 54 - -
Pral4566g00007 283 MobiDBLite consensus disorder prediction 202 233 - -
Pral4566g00007 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Pral4566g00007 283 SMART rrm2_1 51 124 IPR003954 GO:0003676
Pral4566g00007 283 SMART rrm1_1 51 124 IPR000504 GO:0003723
Pral4566g00007 283 MobiDBLite consensus disorder prediction 173 189 - -
Pral4566g00007 283 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 142 - -
Pral4566g00007 283 MobiDBLite consensus disorder prediction 23 44 - -
Pral4566g00007 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 122 IPR000504 GO:0003723
Pral4566g00007 283 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 46 248 - -
Pral4566g00007 283 Gene3D - 2 139 IPR012677 -
Pral4566g00007 283 MobiDBLite consensus disorder prediction 131 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4566g00007 Pral-Chr4566 27391 31497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4566g00007 42 137 Eukaryotic Initiation Factors Gene Family AT1G22760 28.571 2.88e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4566g00007 K12900 - cave:132183604 270.011