Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4566g00002 ATGCAAGCAACTCAAGCAGCCACGAATGAAGGTTCTGATAATTCACAAAAGACTGATCTTCAGTTAAACAGAGAAGTTTCAGACAATGGACCAAGTGGGAGGCGGCCAGATATTTCACTTCAAATCCCACCGAGACATGTAGGTTTTGGAAGTACACGTGGTGGAAGGTCTCTGGACCATTCTCAAAGCTTCTCTAAAGGGCTTCCATCACCACGAGGCATTTTGCGGGCTTTGAGCCTCAAAAGGAAAGGCAATACAGCAGATGCTGAAAGAAGCAGCCTCCTCAATTCAGACCCCAAGGCAGCTCCAGACAGTCCAAATTTGGCCAACTTTCCACCCGCAATTTCATGGAAAAGATGTACTTCTCTTCCTGTTACGCCTGCTACAAATTTGTCCCCTTCAGTTTCTACACCTGCTTCTGCAAGGACATACAGGGAACAACCTAAACGCCATAAAGATGCGGTTGCTGCTGGTTCCCAGGTTTCAAGGTCCCTCTCTGTGCCTGGGAGGAACATGGTTATTGTAAGATCTTTGTCTTTTCCTGCCCGGAGTGAGCACGCACGGCAAGATCAGAATGATGATCAAATAACTCCTGTGCCAGTAGAAGATGCTGATGAAGAAATTCCTGAAGAGGAAGCAGTTTGCAGAATCTGTTATGATGTTTGTGATGAAAGGAACACCCTCAAATTGGAGTGCAGTTGTAAAGGCGACTTGACACTTGTTCATGAAGAATGTGCAATTAAATGGTTTACCACAAAAGGAAATAAGAAATGTGATGTTTGTGGCCAAGAGGTTCAGAATCTACCTGTAACACTGCTTCGTTTGCCCAGCTCTGCTCAGACAGGAAGGAGACAGGCGCAGGGTCAGCAGAACATGAATCCTGAGACGTTAAGTGCTTGGCAAGACTTCGTGGTGCTTGTCCTAATAAGCACAATATGCTATTTTTTCTTCCTTGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATTATAGCAGCACCATTTGCCTTTACCTTGGGTCTCCTGGCATCTATTTTTGCGGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCTCTTGTGGCTATAACAGTACACCTGTTCTATACTATGTTGCACTTGAAGCCCATTTACGCAATACTGCTTTCATCAGTTTTGGGTTTTGGTATGACTATGAGCATCAACTACGCATATATCCAGTATGTTTCTTGGCGTCTGCAAGTCTCCCAGGATGCCAACCCAGTATGA 1272 0.4481 MQATQAATNEGSDNSQKTDLQLNREVSDNGPSGRRPDISLQIPPRHVGFGSTRGGRSLDHSQSFSKGLPSPRGILRALSLKRKGNTADAERSSLLNSDPKAAPDSPNLANFPPAISWKRCTSLPVTPATNLSPSVSTPASARTYREQPKRHKDAVAAGSQVSRSLSVPGRNMVIVRSLSFPARSEHARQDQNDDQITPVPVEDADEEIPEEEAVCRICYDVCDERNTLKLECSCKGDLTLVHEECAIKWFTTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRRQAQGQQNMNPETLSAWQDFVVLVLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHLFYTMLHLKPIYAILLSSVLGFGMTMSINYAYIQYVSWRLQVSQDANPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4566g00002 423 SUPERFAMILY RING/U-box 211 265 - -
Pral4566g00002 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
Pral4566g00002 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Pral4566g00002 423 PANTHER OS02G0165000 PROTEIN 31 419 - -
Pral4566g00002 423 MobiDBLite consensus disorder prediction 1 107 - -
Pral4566g00002 423 CDD RING_CH-C4HC3_MARCH 215 262 - -
Pral4566g00002 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Pral4566g00002 423 MobiDBLite consensus disorder prediction 127 162 - -
Pral4566g00002 423 MobiDBLite consensus disorder prediction 1 28 - -
Pral4566g00002 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Pral4566g00002 423 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4566g00002 Pral-Chr4566 10216 14668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4566g00002 208 322 C3H Transcription Factor Family AT5G05830 31.008 5.55e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4566g00002 - - gmx:100527094 625.935