Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00044 ATGTTGTTTTGCTCCAATCTTGTTGAATCACCACTGCAGGCTCCTTCTTTCCCCCAAAGCTTTAACGCTCTGCCGCTGGACAACTCCCAGTCTCAGTATCATCACAATCTCATGAAGTTTCGGATCGGAGAAGCTTCCGGAGAAACCAGCCACATGAATAATAGTGGCATGGTCGATTATATGCTCCACAACAACAACAATCCTCCTTCTCAACAACAACCGCCTTGTGGGTTTTATGGTGCGCCCGCTGGTTCTACTTTTGATAAGCTGAGTTTCGCAGATGTGATGCAGTTTGCAGATTTCGGACCCAAGTTGTCCTTAAACCAGACCAAGAATTGTGCCGAAGGAGAAGAAGATCAGTCTGGGATGGACCCAGTTTTCTTCCTCAAGTTCCCTGTGTTAAATGACAAGTCGTTAATGGAGGATCAGAATCTGATGGGGACTGGTGCAGGAGAAAACGTAGCAGAAGAAGGAGTGAGAGATCAGGATGAAGTAGAAGCTCGAGGTGTCTCTGATAGTAATAATAATAAGTCGGTGCACCAACTTGGGTTTGTAGGGGAAGACATGGAGAAGAATCATAGTAACCCTACAAGCACAGTGCAAGAGAACAACAACAATACTAATAAGAGCAAGAGAAAGAGACCCAGAACCATCAAAACCAGTCAGGAGGTAGAAAGCCAGCGTATGACTCACATCGCCGTCGAAAGAAACCGTCGGAAGCAAATGAACGAGCATCTTCGCGTCCTCAGATCCCTCATGCCAGGTTCTTACGTCCAAAGGGGGGATCAAGCTTCTATAATAGGAGGAGCCATAGAGTTTGTGAGGGAATTAGAGCAGCTTCTTCAGTGCCTGGAGTCACAGAAGAGAAGGAGGTTACTGGGAGAAGCTTCAAGGCAAGCTGGGGATTCTTCTCTTGCAGTACAGGCGCAGCAACAACAACAAGCTCCCTTTTTTCCACCTTTGGGAGCTTTGCCAAATGATCAGATGAAGCTTGTTGAGTTTGAGAGTGGGCTCAGGGAAGAAACAGCAGAGAACAAGTCGTGTCTGGCTGATGTGGAAGTGAAGCTTTTAGGGTTTGATGCGATGATCAAGATCCTATCAAGAAGAAGACCAGGCCAGTTGATTAAGACCATTGCTGCACTCGAAGATTTGCAGCTTATTATCCTCCACACCAATATCACCACTATTGAACAAACTGTTCTTTATTCTTTCAATGTCAAGGTTGCAGGCGATTCAAGGTTCACAGCGGAAGACATAGCCAGCTCTGTGCAACAGATATTCAGTTTCATTCACGAGAACACTGGAATGTAA 1311 0.4592 MLFCSNLVESPLQAPSFPQSFNALPLDNSQSQYHHNLMKFRIGEASGETSHMNNSGMVDYMLHNNNNPPSQQQPPCGFYGAPAGSTFDKLSFADVMQFADFGPKLSLNQTKNCAEGEEDQSGMDPVFFLKFPVLNDKSLMEDQNLMGTGAGENVAEEGVRDQDEVEARGVSDSNNNKSVHQLGFVGEDMEKNHSNPTSTVQENNNNTNKSKRKRPRTIKTSQEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEASRQAGDSSLAVQAQQQQQAPFFPPLGALPNDQMKLVEFESGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIFSFIHENTGM 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00044 436 Gene3D - 216 292 IPR036638 GO:0046983
Pral4565g00044 436 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 277 IPR011598 GO:0046983
Pral4565g00044 436 FunFam Basic helix-loop-helix transcription factor 217 292 - -
Pral4565g00044 436 PANTHER TRANSCRIPTION FACTOR FAMA 119 427 IPR044283 GO:0003700|GO:0010052
Pral4565g00044 436 SMART finulus 232 283 IPR011598 GO:0046983
Pral4565g00044 436 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 291 IPR036638 GO:0046983
Pral4565g00044 436 Pfam Helix-loop-helix DNA-binding domain 227 278 IPR011598 GO:0046983
Pral4565g00044 436 MobiDBLite consensus disorder prediction 188 228 - -
Pral4565g00044 436 CDD bHLH_AtFAMA_like 229 299 - -
Pral4565g00044 436 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00044 Pral-Chr4565 199866 201517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00044 42 436 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.472 1.28e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4565g00044 HLH 9.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00044 K26213 - cave:132179387 483.026