Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00043 ATGGAGAAAGATCACGACAACTATCATTCGGCTCCTTCTTTCCCCCAAAGCTTTAACGCTCTGCCGCTGGACAACTCCCAGTCTCAGTATCATCACAATCTCATGAAGTTTCGGATCGGAGAAGCTTCCGGAGAAACCAGCCACATGAATAATAGTGGCATGGTCGATTATATGCTCCACAACAACAACAATCCTCCTTCTCAACAACAACCGCCTTGTGGGTTTTATGGTGCGCCCGCTGGTTCTACTTTTGATAAGCTGAGTTTCGCAGATGTGATGCAGTTTGCAGATTTCGGACCCAAGTTGTCCTTAAACCAGACCAAGAATTGTGCCGAAGGAGAAGAAGATCAGTCTGGGATGGACCCAGTTTTCTTCCTCAAGTTCCCTGTGTTAAATGACAAGTCGTTAATGGAGGATCAGAATCTGATGGGGACTGGTGCAGGAGAAAACGTAGCAGAAGAAGGAGTGAGAGATCAGGATGAAGTAGAAGCTCGAGGTGTCTCTGATAGTAATAATAATAAGTCGGTGCACCAACTTGGGTTTGTAGGGGAAGACATGGAGAAGAATCATAGTAACCCTACAAGCACAGTGCAAGAGAACAACAACAATACTAATAAGAGCAAGAGAAAGAGACCCAGAACCATCAAAACCAGTCAGGAGGTAGAAAGCCAGCGTATGACTCACATCGCCGTCGAAAGAAACCGTCGGAAGCAAATGAACGAGCATCTTCGCGTCCTCAGATCCCTCATGCCAGGTTCTTACGTCCAAAGGGGGGATCAAGCTTCTATAATAGGAGGAGCCATAGAGTTTGTGAGGGAATTAGAGCAGCTTCTTCAGTGCCTGGAGTCACAGAAGAGAAGGAGGTTACTGGGAGAAGCTTCAAGGCAAGCTGGGGATTCTTCTCTTGCAGTACAGGCGCAGCAACAACAACAAGCTCCCTTTTTTCCACCTTTGGGAGCTTTGCCAAATGATCAGATGAAGCTTGTTGAGTTTGAGAGTGGGCTCAGGGAAGAAACAGCAGAGAACAAGTCGTGTCTGGCTGATGTGGAAGTGAAGCTTTTAGGGTTTGATGCGATGATCAAGATCCTATCAAGAAGAAGACCAGGCCAGTTGATTAAGACCATTGCTGCACTCGAAGATTTGCAGCTTATTATCCTCCACACCAATATCACCACTATTGAACAAACTGTTCTTTATTCTTTCAATGTCAAGGTTGCAGGCGATTCAAGGTTCACAGCGGAAGACATAGCCAGCTCTGTGCAACAGATATTCAGTTTCATTCACGAGAACACTGGAATGTAA 1302 0.4593 MEKDHDNYHSAPSFPQSFNALPLDNSQSQYHHNLMKFRIGEASGETSHMNNSGMVDYMLHNNNNPPSQQQPPCGFYGAPAGSTFDKLSFADVMQFADFGPKLSLNQTKNCAEGEEDQSGMDPVFFLKFPVLNDKSLMEDQNLMGTGAGENVAEEGVRDQDEVEARGVSDSNNNKSVHQLGFVGEDMEKNHSNPTSTVQENNNNTNKSKRKRPRTIKTSQEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEASRQAGDSSLAVQAQQQQQAPFFPPLGALPNDQMKLVEFESGLREETAENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIFSFIHENTGM 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00043 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 223 274 IPR011598 GO:0046983
Pral4565g00043 433 MobiDBLite consensus disorder prediction 185 223 - -
Pral4565g00043 433 PANTHER TRANSCRIPTION FACTOR FAMA 116 424 IPR044283 GO:0003700|GO:0010052
Pral4565g00043 433 CDD bHLH_AtFAMA_like 226 296 - -
Pral4565g00043 433 MobiDBLite consensus disorder prediction 188 203 - -
Pral4565g00043 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 223 288 IPR036638 GO:0046983
Pral4565g00043 433 MobiDBLite consensus disorder prediction 1 23 - -
Pral4565g00043 433 SMART finulus 229 280 IPR011598 GO:0046983
Pral4565g00043 433 Pfam Helix-loop-helix DNA-binding domain 224 275 IPR011598 GO:0046983
Pral4565g00043 433 FunFam Basic helix-loop-helix transcription factor 214 289 - -
Pral4565g00043 433 Gene3D - 213 289 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00043 Pral-Chr4565 199866 201974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00043 39 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.472 1.34e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4565g00043 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00043 K26213 - gmx:100813515 488.804