Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00036 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAATTCATTCATGACTGAAGGAAAGGTCGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTCGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGCGGACGAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAGCATATTAAAGCAAAAGAACAGCAGCTTCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATTGCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTCATAGATGCTAGAATGGCCCTTTTGAAGTCAACTACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGCAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGACTAAATCCAGGGGTTGGTGGGCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAGCCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAGCAGCAACAACAGCTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCGCCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTCTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCTATGCAATCCACTTCATCCAAGATCAACATGCCACAGATGCAACAACCTACCACTCAGCAACAGCAGGATGCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACTTCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACTATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCACACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCACAGGTCTTGCATCGTCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGCTGATGGAAGAGATTTGTTTGGCACCTTGAAAAGGAACACTTCAGAGCACACAACAGATGCTTCAAAAGGCTTTACCTTTAGTGAAGTTGGCTCCATACGGAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTACAGACGAACACACACTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTCGCAACTTCTTCATTTGATACAACTGTGCGACTCTGGGATGCTGCAGATCCAAACTACTTTTGTTTACAGACATATACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGTGTTTCCAAGGGAGGCTCTACACAGGTAAGGTTTCAGCCAAGAACAGGACACTATCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCGGTCATTACAGGGGCACACTGCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGAATACTTGGCATCCGTGAGTCAAGAATCTGTCAGAGTGTGGTCACTGACCTCTGGGGAGTGCATTCACGAGCTTACGAGCGGGAACATATTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCGTTGGAGCTATGGAACATGGCAGAGAACAGATGCATGACAATAGCAGCTCATGAGTGCGTGATCTCCGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCATCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2355 0.4531 MAQSNWEADKMLDVYIYDYLVKKKLHNTANSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQHIKAKEQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAIASEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTASVTAALQHMQARNQQTPQDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQPTTQQQQDALHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDADGRDLFGTLKRNTSEHTTDASKGFTFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTTDEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSTQVRFQPRTGHYLAAAAGNVVSLYDVETDRLVRSLQGHTADVHSVCWDTNGEYLASVSQESVRVWSLTSGECIHELTSGNIFHSCVFHPSYSTLLVIGGYQSLELWNMAENRCMTIAAHECVISALAQSPVSGMVASASHDKSVKIWK 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00036 784 SUPERFAMILY WD40 repeat-like 497 784 IPR036322 GO:0005515
Pral4565g00036 784 ProSitePatterns Trp-Asp (WD) repeats signature. 522 536 IPR019775 -
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 589 631 IPR001680 GO:0005515
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 545 577 - -
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 545 577 IPR001680 GO:0005515
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 752 784 IPR001680 GO:0005515
Pral4565g00036 784 Gene3D - 634 784 IPR015943 GO:0005515
Pral4565g00036 784 PRINTS G protein beta WD-40 repeat signature 564 578 IPR020472 -
Pral4565g00036 784 PRINTS G protein beta WD-40 repeat signature 771 784 IPR020472 -
Pral4565g00036 784 PRINTS G protein beta WD-40 repeat signature 522 536 IPR020472 -
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 503 538 - -
Pral4565g00036 784 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 589 624 - -
Pral4565g00036 784 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 784 IPR044716 GO:0003714
Pral4565g00036 784 Pfam LisH 10 35 IPR006594 GO:0005515
Pral4565g00036 784 MobiDBLite consensus disorder prediction 332 407 - -
Pral4565g00036 784 MobiDBLite consensus disorder prediction 320 412 - -
Pral4565g00036 784 CDD WD40 499 784 - -
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 752 784 - -
Pral4565g00036 784 SMART WD40_4 705 743 IPR001680 GO:0005515
Pral4565g00036 784 SMART WD40_4 538 577 IPR001680 GO:0005515
Pral4565g00036 784 SMART WD40_4 664 702 IPR001680 GO:0005515
Pral4565g00036 784 SMART WD40_4 582 622 IPR001680 GO:0005515
Pral4565g00036 784 SMART WD40_4 745 784 IPR001680 GO:0005515
Pral4565g00036 784 SMART WD40_4 496 535 IPR001680 GO:0005515
Pral4565g00036 784 SMART WD40_4 625 661 IPR001680 GO:0005515
Pral4565g00036 784 Coils Coil 86 106 - -
Pral4565g00036 784 Pfam WD domain, G-beta repeat 667 702 IPR001680 GO:0005515
Pral4565g00036 784 Pfam WD domain, G-beta repeat 585 622 IPR001680 GO:0005515
Pral4565g00036 784 Pfam WD domain, G-beta repeat 508 535 IPR001680 GO:0005515
Pral4565g00036 784 Pfam WD domain, G-beta repeat 546 577 IPR001680 GO:0005515
Pral4565g00036 784 Pfam WD domain, G-beta repeat 752 784 IPR001680 GO:0005515
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 671 711 IPR001680 GO:0005515
Pral4565g00036 784 Gene3D - 482 633 IPR015943 GO:0005515
Pral4565g00036 784 ProSiteProfiles Trp-Asp (WD) repeats profile. 503 544 IPR001680 GO:0005515
Pral4565g00036 784 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00036 Pral-Chr4565 169866 178161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00036 521 744 U-box Gene Family AT2G33340 28.692 7.16e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral4565g00036 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00036 - - gmx:100797756 1317.37