Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00035 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAATTCATTCATGACTGAAGGAAAGGTCGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTCGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGCGGACGAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAGCATATTAAAGCAAAAGAACAGCAGCTTCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATTGCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTCATAGATGCTAGAATGGCCCTTTTGAAGTCAACTACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGCAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCTGACATTAAAAGTGAAGTCAACATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGACTAAATCCAGGGGTTGGTGGGCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAGCCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAGCAGCAACAACAGCTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCGCCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTCTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCTATGCAATCCACTTCATCCAAGATCAACATGCCACAGATGCAACAACCTACCACTCAGCAACAGCAGGATGCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACTTCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACTATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCACACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCACAGGTCTTGCATCGTCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGCTGATGGAAGAGATTTGTTTGGCACCTTGAAAAGGAACACTTCAGAGCACACAACAGATGCTTCAAAAGGCTTTACCTTTAGTGAAGTTGGCTCCATACGGAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTACAGACGAACACACACTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTCGCAACTTCTTCATTTGATACAACTGTGCGACTCTGGGATGCTGCAGATCCAAACTACTTTTGTTTACAGACATATACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGTGTTTCCAAGGGAGGCTCTACACAGGTAAGGTTTCAGCCAAGAACAGGACACTATCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCGGTCATTACAGGGGCACACTGCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGAATACTTGGCATCCGTGAGTCAAGAATCTGTCAGAGTGTGGTCACTGACCTCTGGGGAGTGCATTCACGAGCTTACGAGCGGGAACATATTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCGTTGGAGCTATGGAACATGGCAGAGAACAGATGCATGACAATAGCAGCTCATGAGTGCGTGATCTCCGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCATCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2352 0.4528 MAQSNWEADKMLDVYIYDYLVKKKLHNTANSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQHIKAKEQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAIASEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTASVTAALQHMQARNQQTPDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQPTTQQQQDALHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDADGRDLFGTLKRNTSEHTTDASKGFTFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTTDEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSTQVRFQPRTGHYLAAAAGNVVSLYDVETDRLVRSLQGHTADVHSVCWDTNGEYLASVSQESVRVWSLTSGECIHELTSGNIFHSCVFHPSYSTLLVIGGYQSLELWNMAENRCMTIAAHECVISALAQSPVSGMVASASHDKSVKIWK 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 670 710 IPR001680 GO:0005515
Pral4565g00035 783 Pfam LisH 10 35 IPR006594 GO:0005515
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 588 623 - -
Pral4565g00035 783 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 783 IPR044716 GO:0003714
Pral4565g00035 783 SUPERFAMILY WD40 repeat-like 496 783 IPR036322 GO:0005515
Pral4565g00035 783 SMART WD40_4 624 660 IPR001680 GO:0005515
Pral4565g00035 783 SMART WD40_4 495 534 IPR001680 GO:0005515
Pral4565g00035 783 SMART WD40_4 704 742 IPR001680 GO:0005515
Pral4565g00035 783 SMART WD40_4 663 701 IPR001680 GO:0005515
Pral4565g00035 783 SMART WD40_4 581 621 IPR001680 GO:0005515
Pral4565g00035 783 SMART WD40_4 744 783 IPR001680 GO:0005515
Pral4565g00035 783 SMART WD40_4 537 576 IPR001680 GO:0005515
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 751 783 - -
Pral4565g00035 783 MobiDBLite consensus disorder prediction 331 406 - -
Pral4565g00035 783 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral4565g00035 783 MobiDBLite consensus disorder prediction 319 411 - -
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 783 IPR001680 GO:0005515
Pral4565g00035 783 CDD WD40 498 783 - -
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 502 537 - -
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 544 576 - -
Pral4565g00035 783 ProSitePatterns Trp-Asp (WD) repeats signature. 521 535 IPR019775 -
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 588 630 IPR001680 GO:0005515
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 502 543 IPR001680 GO:0005515
Pral4565g00035 783 Coils Coil 86 106 - -
Pral4565g00035 783 Gene3D - 469 635 IPR015943 GO:0005515
Pral4565g00035 783 PRINTS G protein beta WD-40 repeat signature 770 783 IPR020472 -
Pral4565g00035 783 PRINTS G protein beta WD-40 repeat signature 521 535 IPR020472 -
Pral4565g00035 783 PRINTS G protein beta WD-40 repeat signature 563 577 IPR020472 -
Pral4565g00035 783 Gene3D - 636 783 IPR015943 GO:0005515
Pral4565g00035 783 ProSiteProfiles Trp-Asp (WD) repeats profile. 544 576 IPR001680 GO:0005515
Pral4565g00035 783 SMART Lish 8 40 IPR006594 GO:0005515
Pral4565g00035 783 Pfam WD domain, G-beta repeat 666 701 IPR001680 GO:0005515
Pral4565g00035 783 Pfam WD domain, G-beta repeat 507 534 IPR001680 GO:0005515
Pral4565g00035 783 Pfam WD domain, G-beta repeat 584 621 IPR001680 GO:0005515
Pral4565g00035 783 Pfam WD domain, G-beta repeat 751 783 IPR001680 GO:0005515
Pral4565g00035 783 Pfam WD domain, G-beta repeat 545 576 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00035 Pral-Chr4565 169865 178161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00035 520 743 U-box Gene Family AT2G33340 28.692 6.77e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral4565g00035 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00035 - - gmx:100797756 1310.82