Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00034 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAATTCATTCATGACTGAAGGAAAGGTCGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTCGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGCGGACGAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAGCATATTAAAGCAAAAGAACAGCAGCTTCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATTGCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTCATAGATGCTAGAATGGCCCTTTTGAAGTCAACTACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGCAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGGGTTGGTGGGCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAGCCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAGCAGCAACAACAGCTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCGCCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTCTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCTATGCAATCCACTTCATCCAAGATCAACATGCCACAGATGCAACAACCTACCACTCAGCAACAGCAGGATGCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACTTCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACTATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCACACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCACAGGTCTTGCATCGTCCACAAATCAACTGTTGCAGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGCTGATGGAAGAGATTTGTTTGGCACCTTGAAAAGGAACACTTCAGAGCACACAACAGATGCTTCAAAAGGCTTTACCTTTAGTGAAGTTGGCTCCATACGGAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTACAGACGAACACACACTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTCGCAACTTCTTCATTTGATACAACTGTGCGACTCTGGGATGCTGCAGATCCAAACTACTTTTGTTTACAGACATATACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGTGTTTCCAAGGGAGGCTCTACACAGGTAAGGTTTCAGCCAAGAACAGGACACTATCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCGGTCATTACAGGGGCACACTGCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGAATACTTGGCATCCGTGAGTCAAGAATCTGTCAGAGTGTGGTCACTGACCTCTGGGGAGTGCATTCACGAGCTTACGAGCGGGAACATATTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCGTTGGAGCTATGGAACATGGCAGAGAACAGATGCATGACAATAGCAGCTCATGAGTGCGTGATCTCCGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCATCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2343 0.4533 MAQSNWEADKMLDVYIYDYLVKKKLHNTANSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQHIKAKEQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAIASEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTASVTAALQHMQARNQQTPQDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQPTTQQQQDALHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGLASSTNQLLQDDMERFGDVGSLDDNVESFLSHDDADGRDLFGTLKRNTSEHTTDASKGFTFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTTDEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSTQVRFQPRTGHYLAAAAGNVVSLYDVETDRLVRSLQGHTADVHSVCWDTNGEYLASVSQESVRVWSLTSGECIHELTSGNIFHSCVFHPSYSTLLVIGGYQSLELWNMAENRCMTIAAHECVISALAQSPVSGMVASASHDKSVKIWK 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00034 780 MobiDBLite consensus disorder prediction 316 407 - -
Pral4565g00034 780 Pfam LisH 10 35 IPR006594 GO:0005515
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 585 620 - -
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 707 IPR001680 GO:0005515
Pral4565g00034 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Pral4565g00034 780 SUPERFAMILY WD40 repeat-like 493 780 IPR036322 GO:0005515
Pral4565g00034 780 MobiDBLite consensus disorder prediction 328 403 - -
Pral4565g00034 780 CDD WD40 495 780 - -
Pral4565g00034 780 Gene3D - 633 780 IPR015943 GO:0005515
Pral4565g00034 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 780 IPR044716 GO:0003714
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Pral4565g00034 780 Coils Coil 86 106 - -
Pral4565g00034 780 PRINTS G protein beta WD-40 repeat signature 767 780 IPR020472 -
Pral4565g00034 780 PRINTS G protein beta WD-40 repeat signature 518 532 IPR020472 -
Pral4565g00034 780 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Pral4565g00034 780 Pfam WD domain, G-beta repeat 748 780 IPR001680 GO:0005515
Pral4565g00034 780 Pfam WD domain, G-beta repeat 663 698 IPR001680 GO:0005515
Pral4565g00034 780 Pfam WD domain, G-beta repeat 581 618 IPR001680 GO:0005515
Pral4565g00034 780 Pfam WD domain, G-beta repeat 542 573 IPR001680 GO:0005515
Pral4565g00034 780 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 585 627 IPR001680 GO:0005515
Pral4565g00034 780 ProSitePatterns Trp-Asp (WD) repeats signature. 518 532 IPR019775 -
Pral4565g00034 780 Gene3D - 466 632 IPR015943 GO:0005515
Pral4565g00034 780 SMART WD40_4 621 657 IPR001680 GO:0005515
Pral4565g00034 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Pral4565g00034 780 SMART WD40_4 492 531 IPR001680 GO:0005515
Pral4565g00034 780 SMART WD40_4 660 698 IPR001680 GO:0005515
Pral4565g00034 780 SMART WD40_4 534 573 IPR001680 GO:0005515
Pral4565g00034 780 SMART WD40_4 578 618 IPR001680 GO:0005515
Pral4565g00034 780 SMART WD40_4 701 739 IPR001680 GO:0005515
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 499 534 - -
Pral4565g00034 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
Pral4565g00034 780 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00034 Pral-Chr4565 169865 178161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00034 517 740 U-box Gene Family AT2G33340 28.692 5.88e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral4565g00034 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00034 - - gmx:100797756 1305.81