Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00033 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAATTCATTCATGACTGAAGGAAAGGTCGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTCGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGCGGACGAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAGCATATTAAAGCAAAAGAACAGCAGCTTCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATTGCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTCATAGATGCTAGAATGGCCCTTTTGAAGTCAACTACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGCAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGACTAAATCCAGGGGTTGGTGGGCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAGCCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAGCAGCAACAACAGCTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCGCCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTCTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCTATGCAATCCACTTCATCCAAGATCAACATGCCACAGATGCAACAACCTACCACTCAGCAACAGCAGGATGCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACTTCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACTATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCACACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCACAGGTCTTGCATCGTCCACAAATCAACTGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGCTGATGGAAGAGATTTGTTTGGCACCTTGAAAAGGAACACTTCAGAGCACACAACAGATGCTTCAAAAGGCTTTACCTTTAGTGAAGTTGGCTCCATACGGAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTACAGACGAACACACACTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTCGCAACTTCTTCATTTGATACAACTGTGCGACTCTGGGATGCTGCAGATCCAAACTACTTTTGTTTACAGACATATACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGTGTTTCCAAGGGAGGCTCTACACAGGTAAGGTTTCAGCCAAGAACAGGACACTATCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCGGTCATTACAGGGGCACACTGCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGAATACTTGGCATCCGTGAGTCAAGAATCTGTCAGAGTGTGGTCACTGACCTCTGGGGAGTGCATTCACGAGCTTACGAGCGGGAACATATTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCGTTGGAGCTATGGAACATGGCAGAGAACAGATGCATGACAATAGCAGCTCATGAGTGCGTGATCTCCGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCATCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2349 0.453 MAQSNWEADKMLDVYIYDYLVKKKLHNTANSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQHIKAKEQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAIASEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTASVTAALQHMQARNQQTPQDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQPTTQQQQDALHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGLASSTNQLDDMERFGDVGSLDDNVESFLSHDDADGRDLFGTLKRNTSEHTTDASKGFTFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTTDEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSTQVRFQPRTGHYLAAAAGNVVSLYDVETDRLVRSLQGHTADVHSVCWDTNGEYLASVSQESVRVWSLTSGECIHELTSGNIFHSCVFHPSYSTLLVIGGYQSLELWNMAENRCMTIAAHECVISALAQSPVSGMVASASHDKSVKIWK 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00033 782 Pfam LisH 10 35 IPR006594 GO:0005515
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 750 782 - -
Pral4565g00033 782 CDD WD40 497 782 - -
Pral4565g00033 782 Pfam WD domain, G-beta repeat 544 575 IPR001680 GO:0005515
Pral4565g00033 782 Pfam WD domain, G-beta repeat 665 700 IPR001680 GO:0005515
Pral4565g00033 782 Pfam WD domain, G-beta repeat 506 533 IPR001680 GO:0005515
Pral4565g00033 782 Pfam WD domain, G-beta repeat 583 620 IPR001680 GO:0005515
Pral4565g00033 782 Pfam WD domain, G-beta repeat 750 782 IPR001680 GO:0005515
Pral4565g00033 782 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 501 542 IPR001680 GO:0005515
Pral4565g00033 782 SUPERFAMILY WD40 repeat-like 495 782 IPR036322 GO:0005515
Pral4565g00033 782 Gene3D - 479 632 IPR015943 GO:0005515
Pral4565g00033 782 Gene3D - 633 782 IPR015943 GO:0005515
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 587 629 IPR001680 GO:0005515
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 501 536 - -
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 750 782 IPR001680 GO:0005515
Pral4565g00033 782 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 782 IPR044716 GO:0003714
Pral4565g00033 782 MobiDBLite consensus disorder prediction 332 407 - -
Pral4565g00033 782 MobiDBLite consensus disorder prediction 320 412 - -
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 709 IPR001680 GO:0005515
Pral4565g00033 782 Coils Coil 86 106 - -
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Pral4565g00033 782 ProSitePatterns Trp-Asp (WD) repeats signature. 520 534 IPR019775 -
Pral4565g00033 782 SMART WD40_4 494 533 IPR001680 GO:0005515
Pral4565g00033 782 SMART WD40_4 623 659 IPR001680 GO:0005515
Pral4565g00033 782 SMART WD40_4 662 700 IPR001680 GO:0005515
Pral4565g00033 782 SMART WD40_4 743 782 IPR001680 GO:0005515
Pral4565g00033 782 SMART WD40_4 580 620 IPR001680 GO:0005515
Pral4565g00033 782 SMART WD40_4 536 575 IPR001680 GO:0005515
Pral4565g00033 782 SMART WD40_4 703 741 IPR001680 GO:0005515
Pral4565g00033 782 PRINTS G protein beta WD-40 repeat signature 520 534 IPR020472 -
Pral4565g00033 782 PRINTS G protein beta WD-40 repeat signature 769 782 IPR020472 -
Pral4565g00033 782 PRINTS G protein beta WD-40 repeat signature 562 576 IPR020472 -
Pral4565g00033 782 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 587 622 - -
Pral4565g00033 782 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00033 Pral-Chr4565 169864 178161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00033 519 742 U-box Gene Family AT2G33340 28.692 6.29e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral4565g00033 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00033 - - gmx:100797756 1308.89