Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00032 ATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTACTTGGTGAAGAAAAAATTGCATAATACTGCCAATTCATTCATGACTGAAGGAAAGGTCGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTCGAGTGGTGGTCTGTATTCTGGGATATTTTTATTGCGCGGACGAACGAGAAACATTCCGAGTCTGCTGCAGCATATTTGGAGGCTCAGCATATTAAAGCAAAAGAACAGCAGCTTCAAATGCAGCAGTTGCAACTTATGCGTCAAGCTCAGCTTCAAAGAAGGGATCCTAATCATCCTCCTCTTGGTGGTACTGTAAATGCTATTGCTTCTGAAGGAATGCTTGGGCAACCTACTGCCAGTGCATTGGCTGCAAAAATGTATGAGGAACGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAACCACTCATAGATGCTAGAATGGCCCTTTTGAAGTCAACTACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGCAAGTGTGACTGCAGCTTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCTGACATTAAAAGTGAAGTCAACATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGAGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGACTAAATCCAGGGGTTGGTGGGCTCACATTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGACCAGGTTTAGGAGCGCAAGTTCAAAAGCCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAGCAGCAACAACAGCTCTTGGCACAGGTTCAGGCACAAGGAAATATTACCAGTTCGCCAATGTATGCAGATATGGATCCTCAACGGTTGAGGGGATTAGCTAGGGGTAGTCTGAATGCAAAAGATGGCCAACCTATTGCAAATGATGGATCAATTGGTTCTCCTATGCAATCCACTTCATCCAAGATCAACATGCCACAGATGCAACAACCTACCACTCAGCAACAGCAGGATGCTTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACTTCTTCAGGAGCTGCCAACAGCACTGGTACTGGAAACACTATCGGCCCTTCTAATTCCCAGCCATCAACCCCATCTACTCACACTCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGTTTGATGATGTATGGTGCTGATGGCACAGGTCTTGCATCGTCCACAAATCAACTGGATGACATGGAACGTTTTGGAGATGTTGGTTCCTTAGATGATAATGTGGAGTCATTTCTTTCACACGATGATGCTGATGGAAGAGATTTGTTTGGCACCTTGAAAAGGAACACTTCAGAGCACACAACAGATGCTTCAAAAGGCTTTACCTTTAGTGAAGTTGGCTCCATACGGAAGAGCAATGGCAAAGTTGTTTGCTGTCACTTCTCATCAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTACAGACGAACACACACTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTCGCAACTTCTTCATTTGATACAACTGTGCGACTCTGGGATGCTGCAGATCCAAACTACTTTTGTTTACAGACATATACGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCAAAGAAAAATGACCTTTTCTGTTCTTGTGATGCCAACAGTGAAATTCGCTTTTGGAATATTAGTCAATATTCCTGCACTCGTGTTTCCAAGGGAGGCTCTACACAGGTAAGGTTTCAGCCAAGAACAGGACACTATCTGGCTGCAGCAGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCTGGTGCGGTCATTACAGGGGCACACTGCAGATGTGCATTCTGTTTGTTGGGATACCAATGGAGAATACTTGGCATCCGTGAGTCAAGAATCTGTCAGAGTGTGGTCACTGACCTCTGGGGAGTGCATTCACGAGCTTACGAGCGGGAACATATTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGAGGTTACCAGTCGTTGGAGCTATGGAACATGGCAGAGAACAGATGCATGACAATAGCAGCTCATGAGTGCGTGATCTCCGCTTTAGCACAATCACCAGTGTCAGGAATGGTTGCATCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2346 0.4527 MAQSNWEADKMLDVYIYDYLVKKKLHNTANSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQHIKAKEQQLQMQQLQLMRQAQLQRRDPNHPPLGGTVNAIASEGMLGQPTASALAAKMYEERMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTASVTAALQHMQARNQQTPDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVGGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQLLAQVQAQGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIANDGSIGSPMQSTSSKINMPQMQQPTTQQQQDALHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGLASSTNQLDDMERFGDVGSLDDNVESFLSHDDADGRDLFGTLKRNTSEHTTDASKGFTFSEVGSIRKSNGKVVCCHFSSDGKLLASAGHDKKVFLWNMETLQTESTTDEHTLIITDVRFRPNSSQLATSSFDTTVRLWDAADPNYFCLQTYTGHTSHVMSLDFHPKKNDLFCSCDANSEIRFWNISQYSCTRVSKGGSTQVRFQPRTGHYLAAAAGNVVSLYDVETDRLVRSLQGHTADVHSVCWDTNGEYLASVSQESVRVWSLTSGECIHELTSGNIFHSCVFHPSYSTLLVIGGYQSLELWNMAENRCMTIAAHECVISALAQSPVSGMVASASHDKSVKIWK 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00032 781 Pfam LisH 10 35 IPR006594 GO:0005515
Pral4565g00032 781 SUPERFAMILY WD40 repeat-like 494 781 IPR036322 GO:0005515
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 574 - -
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 574 IPR001680 GO:0005515
Pral4565g00032 781 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 781 IPR044716 GO:0003714
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 500 541 IPR001680 GO:0005515
Pral4565g00032 781 Coils Coil 777 781 - -
Pral4565g00032 781 CDD WD40 496 781 - -
Pral4565g00032 781 PRINTS G protein beta WD-40 repeat signature 561 575 IPR020472 -
Pral4565g00032 781 PRINTS G protein beta WD-40 repeat signature 519 533 IPR020472 -
Pral4565g00032 781 PRINTS G protein beta WD-40 repeat signature 768 781 IPR020472 -
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 628 IPR001680 GO:0005515
Pral4565g00032 781 Gene3D - 478 631 IPR015943 GO:0005515
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Pral4565g00032 781 MobiDBLite consensus disorder prediction 331 406 - -
Pral4565g00032 781 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pral4565g00032 781 MobiDBLite consensus disorder prediction 319 411 - -
Pral4565g00032 781 Gene3D - 632 781 IPR015943 GO:0005515
Pral4565g00032 781 Pfam WD domain, G-beta repeat 749 781 IPR001680 GO:0005515
Pral4565g00032 781 Pfam WD domain, G-beta repeat 543 574 IPR001680 GO:0005515
Pral4565g00032 781 Pfam WD domain, G-beta repeat 664 699 IPR001680 GO:0005515
Pral4565g00032 781 Pfam WD domain, G-beta repeat 505 532 IPR001680 GO:0005515
Pral4565g00032 781 Pfam WD domain, G-beta repeat 582 619 IPR001680 GO:0005515
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats profile. 668 708 IPR001680 GO:0005515
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 749 781 - -
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 586 621 - -
Pral4565g00032 781 Coils Coil 86 106 - -
Pral4565g00032 781 ProSitePatterns Trp-Asp (WD) repeats signature. 519 533 IPR019775 -
Pral4565g00032 781 SMART WD40_4 493 532 IPR001680 GO:0005515
Pral4565g00032 781 SMART WD40_4 622 658 IPR001680 GO:0005515
Pral4565g00032 781 SMART WD40_4 742 781 IPR001680 GO:0005515
Pral4565g00032 781 SMART WD40_4 661 699 IPR001680 GO:0005515
Pral4565g00032 781 SMART WD40_4 579 619 IPR001680 GO:0005515
Pral4565g00032 781 SMART WD40_4 702 740 IPR001680 GO:0005515
Pral4565g00032 781 SMART WD40_4 535 574 IPR001680 GO:0005515
Pral4565g00032 781 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 500 535 - -
Pral4565g00032 781 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00032 Pral-Chr4565 169862 178161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00032 518 741 U-box Gene Family AT2G33340 28.692 6.11e-20 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pral4565g00032 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00032 - - gmx:100797756 1302.35