Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4565g00001 ATGAATAATGTTAGAAGTAATGACAATATGCAAAAGTTCAAAGGCGTAGTGCCTCAGCAAAATGGTCATTGGGGCGCTCAAATATACGCAAACCACCAAAGAATATGGCTTGGAACCTTCAAATCCGAACGAGAAGCAGCCACTTACGACAGCGCCACCATTAAGCTCCGGAGCGGCGACCACCGGAACTTCCCTTGGAATGATCAAACTGTTCAAGAACCTTTTTTCCAAAGCCATTACAGCACCGAAGCAGTCCTAAGCATGATCAGAGATGGCACCTATCCTTCCAAGTTTGCTTCTTTTCTCTTAAGCACCCGAACTCTAACCCTAACCCTAAATGGGGACGAACAAATAACAAGGGCCAGAAATGACGGTGAGGAAAAATTCTCCTGCACCCAACTTTTCCAGAAGGAACTTACACCAAGTGATGTGGGCAAACTCAATAGGCTCGTCATCCCCAAGAAACATGCGAATAGATATTTCCCTTACGTTTCCGGCACGACAGAAGAAGCTGACAATAATGATAATGGTAATAATAATTATGGGACGACGATGATGGATATTAATAGTGATATTGGGCTTGTGTTTTACGACAAGCTAATGAGGTCGTGGAAATTTAGGTACTGCTATTGGAGAAGCAGCCAAAGCTTTGTGTTCACGAGGGGTTGGAACAGGTTTGTGAAAGACAAGAGATTGAAGGCTAAGGATGTTATTGTATTTTATAAGTGTGAGCCTATAATTATGGGGGTGAAGTTTCTATTTGATTGA 768 0.4271 MNNVRSNDNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEREAAMXYDSATIKLRSGEXHRNFPWNDQTVQEPFFQSHYSTEAVLSMIRDGTYPSKFASFLLSTRTLTLTLNGDEQITRARNDGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHANRYFPYVSGTTEEADNNDNGNNNYGTTMMDINSDIGLVFYDKLMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVIVFYKCEPIIMGVKFLFD 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4565g00001 257 ProSiteProfiles AP2/ERF domain profile. 12 67 IPR001471 GO:0003700|GO:0006355
Pral4565g00001 257 SUPERFAMILY DNA-binding domain 12 69 IPR016177 GO:0003677
Pral4565g00001 257 FunFam AP2 domain-containing protein RAP2.8 11 68 - -
Pral4565g00001 257 Gene3D AP2/ERF domain 11 68 IPR036955 GO:0003700|GO:0006355
Pral4565g00001 257 SMART B3_2 137 253 IPR003340 GO:0003677
Pral4565g00001 257 ProSiteProfiles B3 DNA-binding domain profile. 137 257 IPR003340 GO:0003677
Pral4565g00001 257 SMART rav1_2 12 73 IPR001471 GO:0003700|GO:0006355
Pral4565g00001 257 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Pral4565g00001 257 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 9 245 IPR044800 GO:0003700
Pral4565g00001 257 Pfam B3 DNA binding domain 137 243 IPR003340 GO:0003677
Pral4565g00001 257 CDD B3_DNA 136 243 IPR003340 GO:0003677
Pral4565g00001 257 Gene3D - 125 254 IPR015300 -
Pral4565g00001 257 SUPERFAMILY DNA-binding pseudobarrel domain 135 247 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4565g00001 Pral-Chr4565 15935 16705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4565g00001 9 246 RAV Transcription Factor Family AT1G51120 60.000 1.16e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4565g00001 B3 1.5e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4565g00001 K09287 - qsu:111998385 338.191